Literature DB >> 23836648

Molecule-hugging graphene nanopores.

Slaven Garaj1, Song Liu, Jene A Golovchenko, Daniel Branton.   

Abstract

It has recently been recognized that solid-state nanopores in single-atomic-layer graphene membranes can be used to electronically detect and characterize single long charged polymer molecules. We have now fabricated nanopores in single-layer graphene that are closely matched to the diameter of a double-stranded DNA molecule. Ionic current signals during electrophoretically driven translocation of DNA through these nanopores were experimentally explored and theoretically modeled. Our experiments show that these nanopores have unusually high sensitivity (0.65 nA/Å) to extremely small changes in the translocating molecule's outer diameter. Such atomically short graphene nanopores can also resolve nanoscale-spaced molecular structures along the length of a polymer, but do so with greatest sensitivity only when the pore and molecule diameters are closely matched. Modeling confirms that our most closely matched pores have an inherent resolution of ≤ 0.6 nm along the length of the molecule.

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Year:  2013        PMID: 23836648      PMCID: PMC3725097          DOI: 10.1073/pnas.1220012110

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  27 in total

1.  Ion-beam sculpting at nanometre length scales.

Authors:  J Li; D Stein; C McMullan; D Branton; M J Aziz; J A Golovchenko
Journal:  Nature       Date:  2001-07-12       Impact factor: 49.962

2.  Fabrication of solid-state nanopores with single-nanometre precision.

Authors:  A J Storm; J H Chen; X S Ling; H W Zandbergen; C Dekker
Journal:  Nat Mater       Date:  2003-08       Impact factor: 43.841

3.  Molecular structure of nucleic acids; a structure for deoxyribose nucleic acid.

Authors:  J D WATSON; F H CRICK
Journal:  Nature       Date:  1953-04-25       Impact factor: 49.962

4.  Rapid electronic detection of probe-specific microRNAs using thin nanopore sensors.

Authors:  Meni Wanunu; Tali Dadosh; Vishva Ray; Jingmin Jin; Larry McReynolds; Marija Drndić
Journal:  Nat Nanotechnol       Date:  2010-10-24       Impact factor: 39.213

5.  Detecting single stranded DNA with a solid state nanopore.

Authors:  Daniel Fologea; Marc Gershow; Bradley Ledden; David S McNabb; Jene A Golovchenko; Jiali Li
Journal:  Nano Lett       Date:  2005-10       Impact factor: 11.189

6.  DNA translocation governed by interactions with solid-state nanopores.

Authors:  Meni Wanunu; Jason Sutin; Ben McNally; Andrew Chow; Amit Meller
Journal:  Biophys J       Date:  2008-08-15       Impact factor: 4.033

7.  Characterization of individual polynucleotide molecules using a membrane channel.

Authors:  J J Kasianowicz; E Brandin; D Branton; D W Deamer
Journal:  Proc Natl Acad Sci U S A       Date:  1996-11-26       Impact factor: 11.205

8.  Computational investigation of DNA detection using graphene nanopores.

Authors:  Chaitanya Sathe; Xueqing Zou; Jean-Pierre Leburton; Klaus Schulten
Journal:  ACS Nano       Date:  2011-10-13       Impact factor: 15.881

Review 9.  The potential and challenges of nanopore sequencing.

Authors:  Daniel Branton; David W Deamer; Andre Marziali; Hagan Bayley; Steven A Benner; Thomas Butler; Massimiliano Di Ventra; Slaven Garaj; Andrew Hibbs; Xiaohua Huang; Stevan B Jovanovich; Predrag S Krstic; Stuart Lindsay; Xinsheng Sean Ling; Carlos H Mastrangelo; Amit Meller; John S Oliver; Yuriy V Pershin; J Michael Ramsey; Robert Riehn; Gautam V Soni; Vincent Tabard-Cossa; Meni Wanunu; Matthew Wiggin; Jeffery A Schloss
Journal:  Nat Biotechnol       Date:  2008-10       Impact factor: 54.908

10.  Quantized ionic conductance in nanopores.

Authors:  Michael Zwolak; Johan Lagerqvist; Massimiliano Di Ventra
Journal:  Phys Rev Lett       Date:  2009-09-17       Impact factor: 9.161

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  51 in total

Review 1.  Challenges in DNA motion control and sequence readout using nanopore devices.

Authors:  Spencer Carson; Meni Wanunu
Journal:  Nanotechnology       Date:  2015-02-02       Impact factor: 3.874

2.  Maxwell-Hall access resistance in graphene nanopores.

Authors:  Subin Sahu; Michael Zwolak
Journal:  Phys Chem Chem Phys       Date:  2018-02-14       Impact factor: 3.676

3.  Electrical pulse fabrication of graphene nanopores in electrolyte solution.

Authors:  Aaron T Kuan; Bo Lu; Ping Xie; Tamas Szalay; Jene A Golovchenko
Journal:  Appl Phys Lett       Date:  2015-05-22       Impact factor: 3.791

Review 4.  Fundamental transport mechanisms, fabrication and potential applications of nanoporous atomically thin membranes.

Authors:  Luda Wang; Michael S H Boutilier; Piran R Kidambi; Doojoon Jang; Nicolas G Hadjiconstantinou; Rohit Karnik
Journal:  Nat Nanotechnol       Date:  2017-06-06       Impact factor: 39.213

5.  Graphene Nanopores for Protein Sequencing.

Authors:  James Wilson; Leila Sloman; Zhiren He; Aleksei Aksimentiev
Journal:  Adv Funct Mater       Date:  2016-06-09       Impact factor: 18.808

6.  Colloquium: Ionic phenomena in nanoscale pores through 2D materials.

Authors:  Subin Sahu; Michael Zwolak
Journal:  Rev Mod Phys       Date:  2019       Impact factor: 54.494

7.  Tunable graphene quantum point contact transistor for DNA detection and characterization.

Authors:  Anuj Girdhar; Chaitanya Sathe; Klaus Schulten; Jean-Pierre Leburton
Journal:  Nanotechnology       Date:  2015-03-13       Impact factor: 3.874

8.  Displacement chemistry-based nanopore analysis of nucleic acids in complicated matrices.

Authors:  Liang Wang; Xiaohan Chen; Shuo Zhou; Golbarg M Roozbahani; Youwen Zhang; Deqiang Wang; Xiyun Guan
Journal:  Chem Commun (Camb)       Date:  2018-12-11       Impact factor: 6.222

9.  Real-time label-free measurement of HIV-1 protease activity by nanopore analysis.

Authors:  Liang Wang; Yujing Han; Shuo Zhou; Xiyun Guan
Journal:  Biosens Bioelectron       Date:  2014-06-25       Impact factor: 10.618

10.  Surface modification of graphene nanopores for protein translocation.

Authors:  Y P Shan; P B Tiwari; P Krishnakumar; I Vlassiouk; W Z Li; X W Wang; Y Darici; S M Lindsay; H D Wang; S Smirnov; J He
Journal:  Nanotechnology       Date:  2013-11-14       Impact factor: 3.874

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