Literature DB >> 16839014

Ion solvation in water from molecular dynamics simulation with the ABEEM/MM force field.

Zhong-Zhi Yang1, Xin Li.   

Abstract

A systematic study on monovalent ions in water clusters and in aqueous solution is presented for providing insight into their solvation structures, charge distributions, binding energies, as well as dynamic and thermodynamic properties in terms of the atom-bond electronegativity equalization method fused into molecular mechanics (ABEEM/MM) that is to take ABEEM charges into the Coulomb term in MM. For hydrated systems of M+(H2O)n, M+ being Li+, Na+, and K+, as well as X-(H2O)n, X- being F-, Cl-, and Br-, with n = 1-6, parameters for the effective interaction between the ion and the water molecules were determined, so as to reproduce the experimental or ab initio results. The corresponding parameters were tested with molecular dynamics (MD) simulations of these ions in liquid water and with solvation free energy calculations using the perturbation technique. The results of aqueous ionic solution simulations with the ABEEM/MM force field provide a reasonable description of many important properties, which are in good agreement with the experimental measurements. This work demonstrates that the combination of ABEEM/MM-MD provides a powerful tool in analyzing solvation processes of monovalent ions in water.

Entities:  

Mesh:

Substances:

Year:  2005        PMID: 16839014     DOI: 10.1021/jp051106p

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  4 in total

Review 1.  Metal Ion Modeling Using Classical Mechanics.

Authors:  Pengfei Li; Kenneth M Merz
Journal:  Chem Rev       Date:  2017-01-03       Impact factor: 60.622

2.  Effects of the translational and rotational degrees of freedom on the hydration of simple solutes.

Authors:  Tomaž Mohorič; Barbara Hribar-Lee; Vojko Vlachy
Journal:  J Chem Phys       Date:  2014-05-14       Impact factor: 3.488

3.  Molecular modeling and dynamics studies with explicit inclusion of electronic polarizability. Theory and applications.

Authors:  Pedro E M Lopes; Benoit Roux; Alexander D Mackerell
Journal:  Theor Chem Acc       Date:  2009-09       Impact factor: 1.702

4.  Quantized ionic conductance in nanopores.

Authors:  Michael Zwolak; Johan Lagerqvist; Massimiliano Di Ventra
Journal:  Phys Rev Lett       Date:  2009-09-17       Impact factor: 9.161

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.