Literature DB >> 17718616

Hydration properties of magnesium and calcium ions from constrained first principles molecular dynamics.

Takashi Ikeda1, Mauro Boero, Kiyoyuki Terakura.   

Abstract

We studied the solvation structures of the divalent metal cations Mg(2+) and Ca(2+) in ambient water by applying a Car-Parrinello-based constrained molecular dynamics method. By employing the metal-water oxygen coordination number as a reaction coordinate, we could identify distinct aqua complexes characterized by structural variations of the first coordination shell. In particular, our estimated free-energy profile clearly shows that the global minimum for Mg(2+) is represented by a rather stable sixfold coordination in the octahedral arrangement, in agreement with experiments. Conversely, for Ca(2+) the free-energy curve shows several shallow local minima, suggesting that the hydration structure of Ca(2+) is highly variable. Implications for water exchange reactions are also discussed.

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Year:  2007        PMID: 17718616     DOI: 10.1063/1.2768063

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  13 in total

1.  Studies of Mg2+/Ca2+ complexes of naturally occurring dinucleotides: potentiometric titrations, NMR, and molecular dynamics.

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Review 2.  Metal Ion Modeling Using Classical Mechanics.

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Journal:  Chem Rev       Date:  2017-01-03       Impact factor: 60.622

3.  Water in the formation of biogenic minerals: peeling away the hydration layers.

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4.  Possible roles of exceptionally conserved residues around the selectivity filters of sodium and calcium channels.

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Journal:  J Biol Chem       Date:  2010-11-16       Impact factor: 5.157

5.  Improved model of hydrated calcium ion for molecular dynamics simulations using classical biomolecular force fields.

Authors:  Jejoong Yoo; James Wilson; Aleksei Aksimentiev
Journal:  Biopolymers       Date:  2016-10       Impact factor: 2.505

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Journal:  Proc Natl Acad Sci U S A       Date:  2013-05-30       Impact factor: 11.205

7.  Quantized ionic conductance in nanopores.

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8.  Carbonate-coordinated metal complexes precede the formation of liquid amorphous mineral emulsions of divalent metal carbonates.

Authors:  Stephan E Wolf; Lars Müller; Raul Barrea; Christopher J Kampf; Jork Leiterer; Ulrich Panne; Thorsten Hoffmann; Franziska Emmerling; Wolfgang Tremel
Journal:  Nanoscale       Date:  2011-01-10       Impact factor: 7.790

9.  Determining the atomic charge of calcium ion requires the information of its coordination geometry in an EF-hand motif.

Authors:  Pengzhi Zhang; Jaebeom Han; Piotr Cieplak; Margaret S Cheung
Journal:  J Chem Phys       Date:  2021-03-28       Impact factor: 3.488

10.  Parametrization of DFTB3/3OB for magnesium and zinc for chemical and biological applications.

Authors:  Xiya Lu; Michael Gaus; Marcus Elstner; Qiang Cui
Journal:  J Phys Chem B       Date:  2014-09-16       Impact factor: 2.991

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