Literature DB >> 25066750

Fusion of white and gray matter geometry: a framework for investigating brain development.

Peter Savadjiev1, Yogesh Rathi2, Sylvain Bouix2, Alex R Smith3, Robert T Schultz4, Ragini Verma3, Carl-Fredrik Westin5.   

Abstract

Current neuroimaging investigation of the white matter typically focuses on measurements derived from diffusion tensor imaging, such as fractional anisotropy (FA). In contrast, imaging studies of the gray matter oftentimes focus on morphological features such as cortical thickness, folding and surface curvature. As a result, it is not clear how to combine findings from these two types of approaches in order to obtain a consistent picture of morphological changes in both gray and white matter. In this paper, we propose a joint investigation of gray and white matter morphology by combining geometrical information from white and the gray matter. To achieve this, we first introduce a novel method for computing multi-scale white matter tract geometry. Its formulation is based on the differential geometry of curve sets and is easily incorporated into a continuous scale-space framework. We then incorporate this method into a novel framework for "fusing" white and gray matter geometrical information. Given a set of fiber tracts originating in a particular cortical region, the key idea is to compute two scalar fields that represent geometrical characteristics of the white matter and of the surface of the cortical region. A quantitative marker is created by combining the distributions of these scalar values using Mutual Information. This marker can be then used in the study of normal and pathological brain structure and development. We apply this framework to a study on autism spectrum disorder in children. Our preliminary results support the view that autism may be characterized by early brain overgrowth, followed by reduced or arrested growth (Courchesne, 2004).
Copyright © 2014 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Autism; Cortex; Geometry; Neurodevelopment; White matter

Mesh:

Year:  2014        PMID: 25066750      PMCID: PMC4162846          DOI: 10.1016/j.media.2014.06.013

Source DB:  PubMed          Journal:  Med Image Anal        ISSN: 1361-8415            Impact factor:   8.545


  53 in total

1.  Estimating mutual information.

Authors:  Alexander Kraskov; Harald Stögbauer; Peter Grassberger
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2004-06-23

2.  Linking white matter tracts to associated cortical grey matter: a tract extension methodology.

Authors:  D J Tozer; D T Chard; B Bodini; O Ciccarelli; D H Miller; A J Thompson; C A M Wheeler-Kingshott
Journal:  Neuroimage       Date:  2011-11-04       Impact factor: 6.556

3.  Heart wall myofibers are arranged in minimal surfaces to optimize organ function.

Authors:  Peter Savadjiev; Gustav J Strijkers; Adrianus J Bakermans; Emmanuel Piuze; Steven W Zucker; Kaleem Siddiqi
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-29       Impact factor: 11.205

4.  Neuron number and size in prefrontal cortex of children with autism.

Authors:  Eric Courchesne; Peter R Mouton; Michael E Calhoun; Katerina Semendeferi; Clelia Ahrens-Barbeau; Melodie J Hallet; Cynthia Carter Barnes; Karen Pierce
Journal:  JAMA       Date:  2011-11-09       Impact factor: 56.272

5.  Cortical correspondence with probabilistic fiber connectivity.

Authors:  Ipek Oguz; Marc Niethammer; Josh Cates; Ross Whitaker; Thomas Fletcher; Clement Vachet; Martin Styner
Journal:  Inf Process Med Imaging       Date:  2009

6.  Multi-modal volume registration by maximization of mutual information.

Authors:  W M Wells; P Viola; H Atsumi; S Nakajima; R Kikinis
Journal:  Med Image Anal       Date:  1996-03       Impact factor: 8.545

7.  Cortical surface-based analysis. II: Inflation, flattening, and a surface-based coordinate system.

Authors:  B Fischl; M I Sereno; A M Dale
Journal:  Neuroimage       Date:  1999-02       Impact factor: 6.556

8.  Contribution of thalamic input to the specification of cytoarchitectonic cortical fields in the primate: effects of bilateral enucleation in the fetal monkey on the boundaries, dimensions, and gyrification of striate and extrastriate cortex.

Authors:  C Dehay; P Giroud; M Berland; H Killackey; H Kennedy
Journal:  J Comp Neurol       Date:  1996-03-25       Impact factor: 3.215

9.  Axon diameter mapping in the presence of orientation dispersion with diffusion MRI.

Authors:  Hui Zhang; Penny L Hubbard; Geoff J M Parker; Daniel C Alexander
Journal:  Neuroimage       Date:  2011-02-19       Impact factor: 6.556

Review 10.  Modes and mishaps of neuronal migration in the mammalian brain.

Authors:  Christine Métin; Richard B Vallee; Pasko Rakic; Pradeep G Bhide
Journal:  J Neurosci       Date:  2008-11-12       Impact factor: 6.167

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  14 in total

1.  Sexual dimorphic abnormalities in white matter geometry common to schizophrenia and non-psychotic high-risk subjects: Evidence for a neurodevelopmental risk marker?

Authors:  Peter Savadjiev; Larry J Seidman; Heidi Thermenos; Matcheri Keshavan; Susan Whitfield-Gabrieli; Tim J Crow; Marek Kubicki
Journal:  Hum Brain Mapp       Date:  2015-10-15       Impact factor: 5.038

2.  AxTract: Toward microstructure informed tractography.

Authors:  Gabriel Girard; Alessandro Daducci; Laurent Petit; Jean-Philippe Thiran; Kevin Whittingstall; Rachid Deriche; Demian Wassermann; Maxime Descoteaux
Journal:  Hum Brain Mapp       Date:  2017-08-02       Impact factor: 5.038

3.  A Geometric Framework for Feature Mappings in Multimodal Fusion of Brain Image Data.

Authors:  Wen Zhang; Liang Mi; Paul M Thompson; Yalin Wang
Journal:  Inf Process Med Imaging       Date:  2019-05-22

4.  Enhancing Diffusion MRI Measures By Integrating Grey and White Matter Morphometry With Hyperbolic Wasserstein Distance.

Authors:  Wen Zhang; Jie Shi; Jun Yu; Liang Zhan; Paul M Thompson; Yalin Wang
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2017-06-19

5.  Subject-specific abnormal region detection in traumatic brain injury using sparse model selection on high dimensional diffusion data.

Authors:  Matineh Shaker; Deniz Erdogmus; Jennifer Dy; Sylvain Bouix
Journal:  Med Image Anal       Date:  2017-01-24       Impact factor: 8.545

6.  Utilizing Mutual Information Analysis to Explore the Relationship Between Gray and White Matter Structural Pathologies in Schizophrenia.

Authors:  Amanda E Lyall; Peter Savadjiev; Elisabetta C Del Re; Johanna Seitz; Lauren J O'Donnell; Carl-Fredrik Westin; Raquelle I Mesholam-Gately; Tracey Petryshen; Joanne D Wojcik; Paul Nestor; Margaret Niznikiewicz; Jill Goldstein; Larry J Seidman; Robert W McCarley; Martha E Shenton; Marek Kubicki
Journal:  Schizophr Bull       Date:  2019-03-07       Impact factor: 9.306

Review 7.  Multimodal neuroimaging computing: a review of the applications in neuropsychiatric disorders.

Authors:  Sidong Liu; Weidong Cai; Siqi Liu; Fan Zhang; Michael Fulham; Dagan Feng; Sonia Pujol; Ron Kikinis
Journal:  Brain Inform       Date:  2015-08-29

Review 8.  Multimodal neuroimaging computing: the workflows, methods, and platforms.

Authors:  Sidong Liu; Weidong Cai; Siqi Liu; Fan Zhang; Michael Fulham; Dagan Feng; Sonia Pujol; Ron Kikinis
Journal:  Brain Inform       Date:  2015-09-04

9.  Quantifying indices of short- and long-range white matter connectivity at each cortical vertex.

Authors:  Maria Carmela Padula; Marie Schaer; Elisa Scariati; A Kadir Mutlu; Daniela Zöller; Maude Schneider; Stephan Eliez
Journal:  PLoS One       Date:  2017-11-15       Impact factor: 3.240

10.  Mapping Individual Brain Networks Using Statistical Similarity in Regional Morphology from MRI.

Authors:  Xiang-zhen Kong; Zhaoguo Liu; Lijie Huang; Xu Wang; Zetian Yang; Guangfu Zhou; Zonglei Zhen; Jia Liu
Journal:  PLoS One       Date:  2015-11-04       Impact factor: 3.240

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