Literature DB >> 31280090

Hierarchical spherical deformation for cortical surface registration.

Ilwoo Lyu1, Hakmook Kang2, Neil D Woodward3, Martin A Styner4, Bennett A Landman5.   

Abstract

We present hierarchical spherical deformation for a group-wise shape correspondence to address template selection bias and to minimize registration distortion. In this work, we aim at a continuous and smooth deformation field to guide accurate cortical surface registration. In conventional spherical registration methods, a global rigid alignment and local deformation are independently performed. Motivated by the composition of precession and intrinsic rotation, we simultaneously optimize global rigid rotation and non-rigid local deformation by utilizing spherical harmonics interpolation of local composite rotations in a single framework. To this end, we indirectly encode local displacements by such local composite rotations as functions of spherical locations. Furthermore, we introduce an additional regularization term to the spherical deformation, which maximizes its rigidity while reducing registration distortion. To improve surface registration performance, we employ the second order approximation of the energy function that enables fast convergence of the optimization. In the experiments, we validate our method on healthy normal subjects with manual cortical surface parcellation in registration accuracy and distortion. We show an improved shape correspondence with high accuracy in cortical surface parcellation and significantly low registration distortion in surface area and edge length. In addition to validation, we discuss parameter tuning, optimization, and implementation design with potential acceleration.
Copyright © 2019 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Cortical surface registration; Shape correspondence; Spherical deformation; Spherical harmonics

Year:  2019        PMID: 31280090      PMCID: PMC6733638          DOI: 10.1016/j.media.2019.06.013

Source DB:  PubMed          Journal:  Med Image Anal        ISSN: 1361-8415            Impact factor:   8.545


  43 in total

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Journal:  Hum Brain Mapp       Date:  1999       Impact factor: 5.038

2.  Using a statistical shape model to extract sulcal curves on the outer cortex of the human brain.

Authors:  Xiaodong Tao; Jerry L Prince; Christos Davatzikos
Journal:  IEEE Trans Med Imaging       Date:  2002-05       Impact factor: 10.048

3.  Spectral-based automatic labeling and refining of human cortical sulcal curves using expert-provided examples.

Authors:  Ilwoo Lyu; Joon-Kyung Seong; Sung Yong Shin; Kiho Im; Jee Hoon Roh; Min-Jeong Kim; Geon Ha Kim; Jong Hun Kim; Alan C Evans; Duk L Na; Jong-Min Lee
Journal:  Neuroimage       Date:  2010-04-02       Impact factor: 6.556

4.  Non-rigid surface registration using spherical thin-plate splines.

Authors:  Guangyu Zou; Jing Hua; Otto Muzik
Journal:  Med Image Comput Comput Assist Interv       Date:  2007

5.  Cortical correspondence with probabilistic fiber connectivity.

Authors:  Ipek Oguz; Marc Niethammer; Josh Cates; Ross Whitaker; Thomas Fletcher; Clement Vachet; Martin Styner
Journal:  Inf Process Med Imaging       Date:  2009

6.  Riemannian metric optimization on surfaces (RMOS) for intrinsic brain mapping in the Laplace-Beltrami embedding space.

Authors:  Jin Kyu Gahm; Yonggang Shi
Journal:  Med Image Anal       Date:  2018-03-16       Impact factor: 8.545

7.  Gyrification in first-episode schizophrenia: a morphometric study.

Authors:  Jonathan M Harris; Shona Yates; Patrick Miller; Jonathan J K Best; Eve C Johnstone; Stephen M Lawrie
Journal:  Biol Psychiatry       Date:  2004-01-15       Impact factor: 13.382

8.  Hyperbolic Harmonic Mapping for Surface Registration.

Authors:  Rui Shi; Wei Zeng; Zhengyu Su; Jian Jiang; Hanna Damasio; Zhonglin Lu; Yalin Wang; Shing-Tung Yau; Xianfeng Gu
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2016-05-12       Impact factor: 6.226

9.  TRACE: A Topological Graph Representation for Automatic Sulcal Curve Extraction.

Authors:  Ilwoo Lyu; Sun Hyung Kim; Neil D Woodward; Martin A Styner; Bennett A Landman
Journal:  IEEE Trans Med Imaging       Date:  2018-07       Impact factor: 10.048

10.  101 labeled brain images and a consistent human cortical labeling protocol.

Authors:  Arno Klein; Jason Tourville
Journal:  Front Neurosci       Date:  2012-12-05       Impact factor: 4.677

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  9 in total

1.  Cortical Surface Parcellation using Spherical Convolutional Neural Networks.

Authors:  Prasanna Parvathaneni; Shunxing Bao; Vishwesh Nath; Neil D Woodward; Daniel O Claassen; Carissa J Cascio; David H Zald; Yuankai Huo; Bennett A Landman; Ilwoo Lyu
Journal:  Med Image Comput Comput Assist Interv       Date:  2019-10-10

2.  Establishing Surface Correspondence for Post-surgical Cortical Thickness Changes in Temporal Lobe Epilepsy.

Authors:  Yue Liu; Dario J Englot; Victoria L Morgan; Warren D Taylor; Ying Wei; Ipek Oguz; Bennett A Landman; Ilwoo Lyu
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2021-02-15

3.  Validation of Group-wise Registration for Surface-based Functional MRI Analysis.

Authors:  Chang Yu; Yue Liu; Leon Y Cai; Cailey I Kerley; Kaiwen Xu; Warren D Taylor; Hakmook Kang; Andrea T Shafer; Lori L Beason-Held; Susan M Resnick; Bennett A Landman; Ilwoo Lyu
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2021-02-15

4.  Incomplete Hippocampal Inversion: A Neurodevelopmental Mechanism for Hippocampal Shape Deformation in Schizophrenia.

Authors:  Maxwell J Roeske; Ilwoo Lyu; Maureen McHugo; Jennifer Urbano Blackford; Neil D Woodward; Stephan Heckers
Journal:  Biol Psychiatry       Date:  2022-02-23       Impact factor: 12.810

5.  AUTOMATIC LABELING OF CORTICAL SULCI USING SPHERICAL CONVOLUTIONAL NEURAL NETWORKS IN A DEVELOPMENTAL COHORT.

Authors:  Lingyan Hao; Shunxing Bao; Yucheng Tang; Riqiang Gao; Prasanna Parvathaneni; Jacob A Miller; Willa Voorhies; Jewelia Yao; Silvia A Bunge; Kevin S Weiner; Bennett A Landman; Ilwoo Lyu
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2020-05-22

6.  Joint cortical surface and structural connectivity analysis of Alzheimer's Disease.

Authors:  Leon Y Cai; Cailey I Kerley; Chang Yu; Katherine S Aboud; Lori L Beason-Held; Andrea T Shafer; Susan M Resnick; Lori C Jordan; Adam W Anderson; Kurt G Schilling; Ilwoo Lyu; Bennett A Landman
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2021-02-15

7.  Cortical Morphology in Autism: Findings from a Cortical Shape-Adaptive Approach to Local Gyrification Indexing.

Authors:  Alisa R Zoltowski; Ilwoo Lyu; Michelle Failla; Lisa E Mash; Kacie Dunham; Jacob I Feldman; Tiffany G Woynaroski; Mark T Wallace; Laura A Barquero; Tin Q Nguyen; Laurie E Cutting; Hakmook Kang; Bennett A Landman; Carissa J Cascio
Journal:  Cereb Cortex       Date:  2021-10-01       Impact factor: 4.861

8.  S3Reg: Superfast Spherical Surface Registration Based on Deep Learning.

Authors:  Fenqiang Zhao; Zhengwang Wu; Fan Wang; Weili Lin; Shunren Xia; Dinggang Shen; Li Wang; Gang Li
Journal:  IEEE Trans Med Imaging       Date:  2021-07-30       Impact factor: 11.037

9.  Joint analysis of structural connectivity and cortical surface features: correlates with mild traumatic brain injury.

Authors:  Cailey I Kerley; Leon Y Cai; Chang Yu; Logan M Crawford; Jason M Elenberger; Eden S Singh; Kurt G Schilling; Katherine S Aboud; Bennett A Landman; Tonia S Rex
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2021-02-15
  9 in total

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