Literature DB >> 19567788

The Shared Health Research Information Network (SHRINE): a prototype federated query tool for clinical data repositories.

Griffin M Weber1, Shawn N Murphy, Andrew J McMurry, Douglas Macfadden, Daniel J Nigrin, Susanne Churchill, Isaac S Kohane.   

Abstract

The authors developed a prototype Shared Health Research Information Network (SHRINE) to identify the technical, regulatory, and political challenges of creating a federated query tool for clinical data repositories. Separate Institutional Review Boards (IRBs) at Harvard's three largest affiliated health centers approved use of their data, and the Harvard Medical School IRB approved building a Query Aggregator Interface that can simultaneously send queries to each hospital and display aggregate counts of the number of matching patients. Our experience creating three local repositories using the open source Informatics for Integrating Biology and the Bedside (i2b2) platform can be used as a road map for other institutions. The authors are actively working with the IRBs and regulatory groups to develop procedures that will ultimately allow investigators to obtain identified patient data and biomaterials through SHRINE. This will guide us in creating a future technical architecture that is scalable to a national level, compliant with ethical guidelines, and protective of the interests of the participating hospitals.

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Year:  2009        PMID: 19567788      PMCID: PMC2744712          DOI: 10.1197/jamia.M3191

Source DB:  PubMed          Journal:  J Am Med Inform Assoc        ISSN: 1067-5027            Impact factor:   4.497


  16 in total

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Authors:  J D Halamka; C Osterland; C Safran
Journal:  Int J Med Inform       Date:  1999-04       Impact factor: 4.046

2.  A security architecture for query tools used to access large biomedical databases.

Authors:  Shawn N Murphy; Henry C Chueh
Journal:  Proc AMIA Symp       Date:  2002

3.  A submission model for use in the indexing, searching, and retrieval of distributed pathology case and tissue specimens.

Authors:  Ahmad H Namini; David A Berkowicz; Isaac S Kohane; Henry Chueh
Journal:  Stud Health Technol Inform       Date:  2004

4.  caGrid 1.0: an enterprise Grid infrastructure for biomedical research.

Authors:  Scott Oster; Stephen Langella; Shannon Hastings; David Ervin; Ravi Madduri; Joshua Phillips; Tahsin Kurc; Frank Siebenlist; Peter Covitz; Krishnakant Shanbhag; Ian Foster; Joel Saltz
Journal:  J Am Med Inform Assoc       Date:  2007-12-20       Impact factor: 4.497

5.  A self-scaling, distributed information architecture for public health, research, and clinical care.

Authors:  Andrew J McMurry; Clint A Gilbert; Ben Y Reis; Henry C Chueh; Isaac S Kohane; Kenneth D Mandl
Journal:  J Am Med Inform Assoc       Date:  2007-04-25       Impact factor: 4.497

6.  Architecture of the open-source clinical research chart from Informatics for Integrating Biology and the Bedside.

Authors:  Shawn N Murphy; Michael Mendis; Kristel Hackett; Rajesh Kuttan; Wensong Pan; Lori C Phillips; Vivian Gainer; David Berkowicz; John P Glaser; Isaac Kohane; Henry C Chueh
Journal:  AMIA Annu Symp Proc       Date:  2007-10-11

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Authors:  D J Nigrin; I S Kohane
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Authors:  I S Kohane; P Greenspun; J Fackler; C Cimino; P Szolovits
Journal:  J Am Med Inform Assoc       Date:  1996 May-Jun       Impact factor: 4.497

9.  ClinQuery: a system for online searching of data in a teaching hospital.

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Journal:  Ann Intern Med       Date:  1989-11-01       Impact factor: 25.391

10.  A visual interface designed for novice users to find research patient cohorts in a large biomedical database.

Authors:  Shawn N Murphy; Vivian Gainer; Henry C Chueh
Journal:  AMIA Annu Symp Proc       Date:  2003
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  137 in total

1.  Data analysis and data mining: current issues in biomedical informatics.

Authors:  R Bellazzi; M Diomidous; I N Sarkar; K Takabayashi; A Ziegler; A T McCray
Journal:  Methods Inf Med       Date:  2011       Impact factor: 2.176

2.  Direct2Experts: a pilot national network to demonstrate interoperability among research-networking platforms.

Authors:  Griffin M Weber; William Barnett; Mike Conlon; David Eichmann; Warren Kibbe; Holly Falk-Krzesinski; Michael Halaas; Layne Johnson; Eric Meeks; Donald Mitchell; Titus Schleyer; Sarah Stallings; Michael Warden; Maninder Kahlon
Journal:  J Am Med Inform Assoc       Date:  2011-10-28       Impact factor: 4.497

3.  Expressing observations from electronic medical record flowsheets in an i2b2 based clinical data repository to support research and quality improvement.

Authors:  Lemuel R Waitman; Judith J Warren; E LaVerne Manos; Daniel W Connolly
Journal:  AMIA Annu Symp Proc       Date:  2011-10-22

4.  Using RxNorm for cross-institutional formulary data normalization within a distributed grid-computing environment.

Authors:  Rob Wynden; Nick Anderson; Marco Casale; Prakash Lakshminarayanan; Kent Anderson; Justin Prosser; Larry Errecart; Alice Livshits; Tim Thimman; Mark Weiner
Journal:  AMIA Annu Symp Proc       Date:  2011-10-22

5.  Trends in biomedical informatics: most cited topics from recent years.

Authors:  Hyeon-Eui Kim; Xiaoqian Jiang; Jihoon Kim; Lucila Ohno-Machado
Journal:  J Am Med Inform Assoc       Date:  2011-12       Impact factor: 4.497

6.  A translational engine at the national scale: informatics for integrating biology and the bedside.

Authors:  Isaac S Kohane; Susanne E Churchill; Shawn N Murphy
Journal:  J Am Med Inform Assoc       Date:  2011-11-10       Impact factor: 4.497

7.  Strategies for maintaining patient privacy in i2b2.

Authors:  Shawn N Murphy; Vivian Gainer; Michael Mendis; Susanne Churchill; Isaac Kohane
Journal:  J Am Med Inform Assoc       Date:  2011-10-07       Impact factor: 4.497

Review 8.  Review and evaluation of electronic health records-driven phenotype algorithm authoring tools for clinical and translational research.

Authors:  Jie Xu; Luke V Rasmussen; Pamela L Shaw; Guoqian Jiang; Richard C Kiefer; Huan Mo; Jennifer A Pacheco; Peter Speltz; Qian Zhu; Joshua C Denny; Jyotishman Pathak; William K Thompson; Enid Montague
Journal:  J Am Med Inform Assoc       Date:  2015-07-29       Impact factor: 4.497

9.  Using Closure Tables to Enable Cross-Querying of Ontologies in Database-Driven Applications.

Authors:  Daniel R Harris; Darren W Henderson; Jeffery C Talbert
Journal:  IEEE EMBS Int Conf Biomed Health Inform       Date:  2017-04-13

10.  Expanding Interprofessional EHR Data in i2b2.

Authors:  Bonnie L Westra; Beverly Christie; Steven G Johnson; Lisiane Pruinelli; Anne LaFlamme; Jung In Park; Suzan G Sherman; Matthew D Byrne; Piper Ranallo; Stuart Speedie
Journal:  AMIA Jt Summits Transl Sci Proc       Date:  2016-07-20
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