Literature DB >> 22081225

A translational engine at the national scale: informatics for integrating biology and the bedside.

Isaac S Kohane1, Susanne E Churchill, Shawn N Murphy.   

Abstract

Informatics for integrating biology and the bedside (i2b2) seeks to provide the instrumentation for using the informational by-products of health care and the biological materials accumulated through the delivery of health care to conduct discovery research and to study the healthcare system in vivo. This complements existing efforts such as prospective cohort studies or trials outside the delivery of routine health care. i2b2 has been used to generate genome-wide studies at less than one tenth the cost and one tenth the time of conventionally performed studies as well as to identify important risk from commonly used medications. i2b2 has been adopted by over 60 academic health centers internationally.

Mesh:

Year:  2011        PMID: 22081225      PMCID: PMC3277623          DOI: 10.1136/amiajnl-2011-000492

Source DB:  PubMed          Journal:  J Am Med Inform Assoc        ISSN: 1067-5027            Impact factor:   4.497


  28 in total

1.  Robust replication of genotype-phenotype associations across multiple diseases in an electronic medical record.

Authors:  Marylyn D Ritchie; Joshua C Denny; Dana C Crawford; Andrea H Ramirez; Justin B Weiner; Jill M Pulley; Melissa A Basford; Kristin Brown-Gentry; Jeffrey R Balser; Daniel R Masys; Jonathan L Haines; Dan M Roden
Journal:  Am J Hum Genet       Date:  2010-04-01       Impact factor: 11.025

2.  Identification of genomic predictors of atrioventricular conduction: using electronic medical records as a tool for genome science.

Authors:  Joshua C Denny; Marylyn D Ritchie; Dana C Crawford; Jonathan S Schildcrout; Andrea H Ramirez; Jill M Pulley; Melissa A Basford; Daniel R Masys; Jonathan L Haines; Dan M Roden
Journal:  Circulation       Date:  2010-11-01       Impact factor: 29.690

3.  Instrumenting the health care enterprise for discovery research in the genomic era.

Authors:  Shawn Murphy; Susanne Churchill; Lynn Bry; Henry Chueh; Scott Weiss; Ross Lazarus; Qing Zeng; Anil Dubey; Vivian Gainer; Michael Mendis; John Glaser; Isaac Kohane
Journal:  Genome Res       Date:  2009-07-14       Impact factor: 9.043

4.  The Shared Health Research Information Network (SHRINE): a prototype federated query tool for clinical data repositories.

Authors:  Griffin M Weber; Shawn N Murphy; Andrew J McMurry; Douglas Macfadden; Daniel J Nigrin; Susanne Churchill; Isaac S Kohane
Journal:  J Am Med Inform Assoc       Date:  2009-06-30       Impact factor: 4.497

5.  Principles of human subjects protections applied in an opt-out, de-identified biobank.

Authors:  Jill Pulley; Ellen Clayton; Gordon R Bernard; Dan M Roden; Daniel R Masys
Journal:  Clin Transl Sci       Date:  2010-02       Impact factor: 4.689

6.  Electronic medical records for discovery research in rheumatoid arthritis.

Authors:  Katherine P Liao; Tianxi Cai; Vivian Gainer; Sergey Goryachev; Qing Zeng-treitler; Soumya Raychaudhuri; Peter Szolovits; Susanne Churchill; Shawn Murphy; Isaac Kohane; Elizabeth W Karlson; Robert M Plenge
Journal:  Arthritis Care Res (Hoboken)       Date:  2010-08       Impact factor: 4.794

7.  Serving the enterprise and beyond with informatics for integrating biology and the bedside (i2b2).

Authors:  Shawn N Murphy; Griffin Weber; Michael Mendis; Vivian Gainer; Henry C Chueh; Susanne Churchill; Isaac Kohane
Journal:  J Am Med Inform Assoc       Date:  2010 Mar-Apr       Impact factor: 4.497

8.  PheWAS: demonstrating the feasibility of a phenome-wide scan to discover gene-disease associations.

Authors:  Joshua C Denny; Marylyn D Ritchie; Melissa A Basford; Jill M Pulley; Lisa Bastarache; Kristin Brown-Gentry; Deede Wang; Dan R Masys; Dan M Roden; Dana C Crawford
Journal:  Bioinformatics       Date:  2010-03-24       Impact factor: 6.937

9.  Assessing the accuracy of observer-reported ancestry in a biorepository linked to electronic medical records.

Authors:  Logan Dumitrescu; Marylyn D Ritchie; Kristin Brown-Gentry; Jill M Pulley; Melissa Basford; Joshua C Denny; Jorge R Oksenberg; Dan M Roden; Jonathan L Haines; Dana C Crawford
Journal:  Genet Med       Date:  2010-10       Impact factor: 8.822

10.  Rapid identification of myocardial infarction risk associated with diabetes medications using electronic medical records.

Authors:  John S Brownstein; Shawn N Murphy; Allison B Goldfine; Richard W Grant; Margarita Sordo; Vivian Gainer; Judith A Colecchi; Anil Dubey; David M Nathan; John P Glaser; Isaac S Kohane
Journal:  Diabetes Care       Date:  2009-12-15       Impact factor: 19.112

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  80 in total

1.  National Centers for Biomedical Computing: from the BISTI report to the future.

Authors:  Jeremy M Berg
Journal:  J Am Med Inform Assoc       Date:  2012-01-18       Impact factor: 4.497

2.  Trends in biomedical informatics: automated topic analysis of JAMIA articles.

Authors:  Dong Han; Shuang Wang; Chao Jiang; Xiaoqian Jiang; Hyeon-Eui Kim; Jimeng Sun; Lucila Ohno-Machado
Journal:  J Am Med Inform Assoc       Date:  2015-11       Impact factor: 4.497

3.  Using i2b2 to Bootstrap Rural Health Analytics and Learning Networks.

Authors:  Daniel R Harris; Adam D Baus; Tamela J Harper; Traci D Jarrett; Cecil R Pollard; Jeffery C Talbert
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2016-08

4.  Assessing the Quality of Electronic Data for 'Fit-for-Purpose' by Utilizing Data Profiling Techniques Prior to Conducting a Survival Analysis for Adults with Acute Lymphoblastic Leukemia.

Authors:  Victoria Ngo; Theresa H Keegan; Brian A Jonas; Michael Hogarth; Katherine K Kim
Journal:  AMIA Annu Symp Proc       Date:  2021-01-25

5.  Computable Eligibility Criteria through Ontology-driven Data Access: A Case Study of Hepatitis C Virus Trials.

Authors:  Hansi Zhang; Zhe He; Xing He; Yi Guo; David R Nelson; François Modave; Yonghui Wu; William Hogan; Mattia Prosperi; Jiang Bian
Journal:  AMIA Annu Symp Proc       Date:  2018-12-05

6.  Automated Population of an i2b2 Clinical Data Warehouse using FHIR.

Authors:  Harold R Solbrig; Na Hong; Shawn N Murphy; Guoqian Jiang
Journal:  AMIA Annu Symp Proc       Date:  2018-12-05

7.  Integrity of clinical information in computerized order requisitions for diagnostic imaging.

Authors:  Ronilda Lacson; Romeo Laroya; Aijia Wang; Neena Kapoor; Daniel I Glazer; Atul Shinagare; Ivan K Ip; Sameer Malhotra; Keith Hentel; Ramin Khorasani
Journal:  J Am Med Inform Assoc       Date:  2018-12-01       Impact factor: 4.497

8.  Children's rare disease cohorts: an integrative research and clinical genomics initiative.

Authors:  Shira Rockowitz; Nicholas LeCompte; Mary Carmack; Andrew Quitadamo; Lily Wang; Meredith Park; Devon Knight; Emma Sexton; Lacey Smith; Beth Sheidley; Michael Field; Ingrid A Holm; Catherine A Brownstein; Pankaj B Agrawal; Susan Kornetsky; Annapurna Poduri; Scott B Snapper; Alan H Beggs; Timothy W Yu; David A Williams; Piotr Sliz
Journal:  NPJ Genom Med       Date:  2020-07-06       Impact factor: 8.617

9.  Leveraging Terminology Services for Extract-Transform-Load Processes: A User-Centered Approach.

Authors:  Kevin J Peterson; Guoqian Jiang; Scott M Brue; Hongfang Liu
Journal:  AMIA Annu Symp Proc       Date:  2017-02-10

10.  Using Closure Tables to Enable Cross-Querying of Ontologies in Database-Driven Applications.

Authors:  Daniel R Harris; Darren W Henderson; Jeffery C Talbert
Journal:  IEEE EMBS Int Conf Biomed Health Inform       Date:  2017-04-13
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