Literature DB >> 18693896

Architecture of the open-source clinical research chart from Informatics for Integrating Biology and the Bedside.

Shawn N Murphy1, Michael Mendis, Kristel Hackett, Rajesh Kuttan, Wensong Pan, Lori C Phillips, Vivian Gainer, David Berkowicz, John P Glaser, Isaac Kohane, Henry C Chueh.   

Abstract

The Informatics for Integrating Biology and the Bedside (i2b2) is one of the sponsored initiatives of the NIH Roadmap National Centers for Biomedical Computing (http://www.bisti.nih.gov/ncbc/). One of the goals of i2b2 is to provide clinical investigators broadly with the software tools necessary to collect and manage project-related clinical research data in the genomics age as a cohesive entity, a software suite to construct and manage the modern clinical research chart. The i2b2 "hive" is a set of software modules called "cells" that have a common messaging protocol that allow them to interact using web services and XML messages. Each cell can be developed by independent investigators to achieve specific analytic goals, and then be integrated into the hive to enhance the functionality available in the i2b2 Hive. We have applied this architecture through several ongoing clinical studies and found it to be of high value. The current version of this software has been released into the public domain and is available at the URL-http://www.i2b2.org.

Mesh:

Year:  2007        PMID: 18693896      PMCID: PMC2655844     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  1 in total

1.  Optimizing healthcare research data warehouse design through past COSTAR query analysis.

Authors:  S N Murphy; M M Morgan; G O Barnett; H C Chueh
Journal:  Proc AMIA Symp       Date:  1999
  1 in total
  85 in total

1.  A translational engine at the national scale: informatics for integrating biology and the bedside.

Authors:  Isaac S Kohane; Susanne E Churchill; Shawn N Murphy
Journal:  J Am Med Inform Assoc       Date:  2011-11-10       Impact factor: 4.497

2.  A multi-layered framework for disseminating knowledge for computer-based decision support.

Authors:  Aziz A Boxwala; Beatriz H Rocha; Saverio Maviglia; Vipul Kashyap; Seth Meltzer; Jihoon Kim; Ruslana Tsurikova; Adam Wright; Marilyn D Paterno; Amanda Fairbanks; Blackford Middleton
Journal:  J Am Med Inform Assoc       Date:  2011-11-03       Impact factor: 4.497

3.  STRIDE--An integrated standards-based translational research informatics platform.

Authors:  Henry J Lowe; Todd A Ferris; Penni M Hernandez; Susan C Weber
Journal:  AMIA Annu Symp Proc       Date:  2009-11-14

4.  A clinical use case to evaluate the i2b2 Hive: predicting asthma exacerbations.

Authors:  Stéphane M Meystre; Vikrant G Deshmukh; Joyce Mitchell
Journal:  AMIA Annu Symp Proc       Date:  2009-11-14

5.  Secondary Use of Clinical Data to Enable Data-Driven Translational Science with Trustworthy Access Management.

Authors:  Abu Saleh Mohammad Mosa; Illhoi Yoo; Nate C Apathy; Kelly J Ko; Jerry C Parker
Journal:  Mo Med       Date:  2015 Nov-Dec

6.  Evaluation of a flowchart-based EHR query system: a case study of RetroGuide.

Authors:  Vojtech Huser; Scott P Narus; Roberto A Rocha
Journal:  J Biomed Inform       Date:  2009-06-26       Impact factor: 6.317

7.  Prevalence and implications of cytochrome P450 substrates in Massachusetts hospital discharges.

Authors:  T H McCoy; V M Castro; A Cagan; A M Roberson; R H Perlis
Journal:  Pharmacogenomics J       Date:  2016-05-10       Impact factor: 3.550

8.  The Shared Health Research Information Network (SHRINE): a prototype federated query tool for clinical data repositories.

Authors:  Griffin M Weber; Shawn N Murphy; Andrew J McMurry; Douglas Macfadden; Daniel J Nigrin; Susanne Churchill; Isaac S Kohane
Journal:  J Am Med Inform Assoc       Date:  2009-06-30       Impact factor: 4.497

9.  Extracting insights from electronic health records: case studies, a visual analytics process model, and design recommendations.

Authors:  Taowei David Wang; Krist Wongsuphasawat; Catherine Plaisant; Ben Shneiderman
Journal:  J Med Syst       Date:  2011-05-04       Impact factor: 4.460

10.  Using electronic medical records to enable large-scale studies in psychiatry: treatment resistant depression as a model.

Authors:  R H Perlis; D V Iosifescu; V M Castro; S N Murphy; V S Gainer; J Minnier; T Cai; S Goryachev; Q Zeng; P J Gallagher; M Fava; J B Weilburg; S E Churchill; I S Kohane; J W Smoller
Journal:  Psychol Med       Date:  2011-06-20       Impact factor: 7.723

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