Literature DB >> 14728221

A visual interface designed for novice users to find research patient cohorts in a large biomedical database.

Shawn N Murphy1, Vivian Gainer, Henry C Chueh.   

Abstract

One of the more difficult tasks of informatics is allowing for the navigation of complex databases. At Partners Healthcare Inc. we have developed an analytical database to allow for searching clinical data to obtain cohorts of patients for research studies. The characteristics of the patients within the cohorts must often comply with complex inclusion and exclusion criteria. The users of the database are research clinicians, often with no prior database experience. To assist these clinicians in finding their patient cohorts, we constructed a Querytool that they use directly to find their desired populations. In order to understand if the Querytool could indeed be used successfully by novice users, we analyzed the first 10 queries of 219 users. This analysis was able show that novice users are able to achieve excellent success using the Querytool

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Mesh:

Year:  2003        PMID: 14728221      PMCID: PMC1480150     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  5 in total

1.  Optimizing healthcare research data warehouse design through past COSTAR query analysis.

Authors:  S N Murphy; M M Morgan; G O Barnett; H C Chueh
Journal:  Proc AMIA Symp       Date:  1999

2.  A security architecture for query tools used to access large biomedical databases.

Authors:  Shawn N Murphy; Henry C Chueh
Journal:  Proc AMIA Symp       Date:  2002

3.  LifeLines: using visualization to enhance navigation and analysis of patient records.

Authors:  C Plaisant; R Mushlin; A Snyder; J Li; D Heller; B Shneiderman
Journal:  Proc AMIA Symp       Date:  1998

4.  Data mining by clinicians.

Authors:  D J Nigrin; I S Kohane
Journal:  Proc AMIA Symp       Date:  1998

5.  A graphical query generator for clinical research databases.

Authors:  F Banhart; H Klaeren
Journal:  Methods Inf Med       Date:  1995-09       Impact factor: 2.176

  5 in total
  24 in total

1.  Strategies for maintaining patient privacy in i2b2.

Authors:  Shawn N Murphy; Vivian Gainer; Michael Mendis; Susanne Churchill; Isaac Kohane
Journal:  J Am Med Inform Assoc       Date:  2011-10-07       Impact factor: 4.497

Review 2.  Review and evaluation of electronic health records-driven phenotype algorithm authoring tools for clinical and translational research.

Authors:  Jie Xu; Luke V Rasmussen; Pamela L Shaw; Guoqian Jiang; Richard C Kiefer; Huan Mo; Jennifer A Pacheco; Peter Speltz; Qian Zhu; Joshua C Denny; Jyotishman Pathak; William K Thompson; Enid Montague
Journal:  J Am Med Inform Assoc       Date:  2015-07-29       Impact factor: 4.497

3.  Integration of clinical and genetic data in the i2b2 architecture.

Authors:  Shawn N Murphy; Michael E Mendis; David A Berkowitz; Isaac Kohane; Henry C Chueh
Journal:  AMIA Annu Symp Proc       Date:  2006

4.  A web portal that enables collaborative use of advanced medical image processing and informatics tools through the Biomedical Informatics Research Network (BIRN).

Authors:  Shawn N Murphy; Michael E Mendis; Jeffrey S Grethe; Randy L Gollub; David Kennedy; Bruce R Rosen
Journal:  AMIA Annu Symp Proc       Date:  2006

5.  Identification of misspelled words without a comprehensive dictionary using prevalence analysis.

Authors:  Alexander Turchin; Julia T Chu; Maria Shubina; Jonathan S Einbinder
Journal:  AMIA Annu Symp Proc       Date:  2007-10-11

6.  Evaluation of a flowchart-based EHR query system: a case study of RetroGuide.

Authors:  Vojtech Huser; Scott P Narus; Roberto A Rocha
Journal:  J Biomed Inform       Date:  2009-06-26       Impact factor: 6.317

7.  The Shared Health Research Information Network (SHRINE): a prototype federated query tool for clinical data repositories.

Authors:  Griffin M Weber; Shawn N Murphy; Andrew J McMurry; Douglas Macfadden; Daniel J Nigrin; Susanne Churchill; Isaac S Kohane
Journal:  J Am Med Inform Assoc       Date:  2009-06-30       Impact factor: 4.497

8.  Can de facto dosing practices bridge the knowledge gap in pediatric medication recommendations?

Authors:  Elisabeth L Scheufele; Anil Dubey
Journal:  AMIA Annu Symp Proc       Date:  2009-11-14

9.  Identifying clinical/translational research cohorts: ascertainment via querying an integrated multi-source database.

Authors:  John F Hurdle; Stephen C Haroldsen; Andrew Hammer; Cindy Spigle; Alison M Fraser; Geraldine P Mineau; Samir J Courdy
Journal:  J Am Med Inform Assoc       Date:  2012-10-11       Impact factor: 4.497

Review 10.  Facilitating biomedical researchers' interrogation of electronic health record data: Ideas from outside of biomedical informatics.

Authors:  Gregory W Hruby; Konstantina Matsoukas; James J Cimino; Chunhua Weng
Journal:  J Biomed Inform       Date:  2016-03-10       Impact factor: 6.317

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