Literature DB >> 23332075

Breaking the radiation damage limit with Cryo-SAXS.

Steve P Meisburger1, Matthew Warkentin, Huimin Chen, Jesse B Hopkins, Richard E Gillilan, Lois Pollack, Robert E Thorne.   

Abstract

Small angle x-ray scattering (SAXS) is a versatile and widely used technique for obtaining low-resolution structures of macromolecules and complexes. SAXS experiments measure molecules in solution, without the need for labeling or crystallization. However, radiation damage currently limits the application of SAXS to molecules that can be produced in microgram quantities; for typical proteins, 10-20 μL of solution at 1 mg/mL is required to accumulate adequate signal before irreversible x-ray damage is observed. Here, we show that cryocooled proteins and nucleic acids can withstand doses at least two orders of magnitude larger than room temperature samples. We demonstrate accurate T = 100 K particle envelope reconstructions from sample volumes as small as 15 nL, a factor of 1000 smaller than in current practice. Cryo-SAXS will thus enable structure determination of difficult-to-express proteins and biologically important, highly radiation-sensitive proteins including light-activated switches and metalloenzymes.
Copyright © 2013 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2013        PMID: 23332075      PMCID: PMC3540250          DOI: 10.1016/j.bpj.2012.11.3817

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  43 in total

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Authors:  Jesse B Hopkins; Ryan Badeau; Matthew Warkentin; Robert E Thorne
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Review 3.  Cryo-cooling in macromolecular crystallography: advantages, disadvantages and optimization.

Authors:  Douglas H Juers; Brian W Matthews
Journal:  Q Rev Biophys       Date:  2004-05       Impact factor: 5.318

4.  Factors regulating thermodynamic stability of DNA structures under molecular crowding conditions.

Authors:  Daisuke Miyoshi; Hisae Karimata; Naoki Sugimoto
Journal:  Nucleic Acids Symp Ser (Oxf)       Date:  2006

Review 5.  X-ray solution scattering (SAXS) combined with crystallography and computation: defining accurate macromolecular structures, conformations and assemblies in solution.

Authors:  Christopher D Putnam; Michal Hammel; Greg L Hura; John A Tainer
Journal:  Q Rev Biophys       Date:  2007-08       Impact factor: 5.318

Review 6.  Crystallography of biological macromolecules at ultra-low temperature.

Authors:  H Hope
Journal:  Annu Rev Biophys Biophys Chem       Date:  1990

7.  Structural Characteristics in Protein Hydration Investigated by Cryogenic X-ray Crystal Structure Analyses.

Authors:  Masayoshi Nakasako
Journal:  J Biol Phys       Date:  2002-06       Impact factor: 1.365

8.  Primary radiation damage of protein crystals by an intense synchrotron X-ray beam.

Authors:  T Y Teng; K Moffat
Journal:  J Synchrotron Radiat       Date:  2000-09-01       Impact factor: 2.616

9.  Know your dose: RADDOSE.

Authors:  Karthik S Paithankar; Elspeth F Garman
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

10.  Illuminating solution responses of a LOV domain protein with photocoupled small-angle X-ray scattering.

Authors:  Jessica S Lamb; Brian D Zoltowski; Suzette A Pabit; Li Li; Brian R Crane; Lois Pollack
Journal:  J Mol Biol       Date:  2009-08-25       Impact factor: 5.469

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  21 in total

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2.  Measuring the Densities of Aqueous Glasses at Cryogenic Temperatures.

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Review 3.  Emerging applications of small angle solution scattering in structural biology.

Authors:  Barnali N Chaudhuri
Journal:  Protein Sci       Date:  2015-02-12       Impact factor: 6.725

4.  A microfabricated fixed path length silicon sample holder improves background subtraction for cryoSAXS.

Authors:  Jesse B Hopkins; Andrea M Katz; Steve P Meisburger; Matthew A Warkentin; Robert E Thorne; Lois Pollack
Journal:  J Appl Crystallogr       Date:  2015-01-30       Impact factor: 3.304

5.  Upgrade of MacCHESS facility for X-ray scattering of biological macromolecules in solution.

Authors:  Alvin Samuel Acerbo; Michael J Cook; Richard Edward Gillilan
Journal:  J Synchrotron Radiat       Date:  2015-01-01       Impact factor: 2.616

Review 6.  Predicting data quality in biological X-ray solution scattering.

Authors:  Chenzheng Wang; Yuexia Lin; Devin Bougie; Richard E Gillilan
Journal:  Acta Crystallogr D Struct Biol       Date:  2018-07-24       Impact factor: 7.652

7.  Quantifying radiation damage in biomolecular small-angle X-ray scattering.

Authors:  Jesse B Hopkins; Robert E Thorne
Journal:  J Appl Crystallogr       Date:  2016-05-04       Impact factor: 3.304

8.  Molecular crowding favors reactivity of a human ribozyme under physiological ionic conditions.

Authors:  Christopher A Strulson; Neela H Yennawar; Robert P Rambo; Philip C Bevilacqua
Journal:  Biochemistry       Date:  2013-11-04       Impact factor: 3.162

9.  High-pressure small-angle X-ray scattering cell for biological solutions and soft materials.

Authors:  Durgesh K Rai; Richard E Gillilan; Qingqiu Huang; Robert Miller; Edmund Ting; Alexander Lazarev; Mark W Tate; Sol M Gruner
Journal:  J Appl Crystallogr       Date:  2021-02-01       Impact factor: 3.304

10.  Uniqueness of models from small-angle scattering data: the impact of a hydration shell and complementary NMR restraints.

Authors:  Henry S Kim; Frank Gabel
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2015-01-01
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