Literature DB >> 10645954

ACAPELLA-1K, a capillary-based submicroliter automated fluid handling system for genome analysis.

D R Meldrum1, H T Evensen, W H Pence, S E Moody, D L Cunningham, P J Wiktor.   

Abstract

The Genomation Laboratory in the Electrical Engineering Department at the University of Washington has been developing an automated, high-throughput, submicroliter-scale fluid-handling system for use in molecular biology, especially as part of the Human Genome Project and other high-throughput DNA sequencing endeavors. Small glass capillaries enable the preparation, handling, and monitoring of 1-microliter reaction volumes. The Genomation Laboratory, with corporate partners Orca Photonic Systems, Inc. and Engineering Arts, has developed modules for aspiration, dispensing, mixing, transport, and rapid thermal processing of biological samples contained in glass capillaries. The ACAPELLA-1K is the first integration of these modules, designed to process 1000 samples in an eight-hour day. It has served as a test bed for the technologies as well as for performing biological experiments in conjunction with the University of Washington Genome Center. This system and related results are presented in this paper. A video of the system in operation is provided at. The Genomation Laboratory is presently developing the next-stage ACAPELLA-5K system based on the results of the ACAPELLA-1K system.

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Year:  2000        PMID: 10645954      PMCID: PMC310502     

Source DB:  PubMed          Journal:  Genome Res        ISSN: 1088-9051            Impact factor:   9.043


  17 in total

1.  High-density small-volume gel loading directly from capillary tubes.

Authors:  H T Evensen; D R Meldrum; C Saenphimmachak; E E Dixon
Journal:  Biotechniques       Date:  1999-11       Impact factor: 1.993

2.  Rapid cycle DNA amplification: time and temperature optimization.

Authors:  C T Wittwer; D J Garling
Journal:  Biotechniques       Date:  1991-01       Impact factor: 1.993

Review 3.  Large-scale and automated DNA sequence determination.

Authors:  T Hunkapiller; R J Kaiser; B F Koop; L Hood
Journal:  Science       Date:  1991-10-04       Impact factor: 47.728

4.  Flexible software architecture for user-interface and machine control in laboratory automation.

Authors:  E B Arutunian; D R Meldrum; N A Friedman; S E Moody
Journal:  Biotechniques       Date:  1998-10       Impact factor: 1.993

Review 5.  Capillary array electrophoresis DNA sequencing.

Authors:  I Kheterpal; R A Mathies
Journal:  Anal Chem       Date:  1999-01-01       Impact factor: 6.986

6.  Minimizing the time required for DNA amplification by efficient heat transfer to small samples.

Authors:  C T Wittwer; G C Fillmore; D J Garling
Journal:  Anal Biochem       Date:  1990-05-01       Impact factor: 3.365

7.  Automated polymerase chain reaction in capillary tubes with hot air.

Authors:  C T Wittwer; G C Fillmore; D R Hillyard
Journal:  Nucleic Acids Res       Date:  1989-06-12       Impact factor: 16.971

Review 8.  Automated DNA sequencing and analysis of the human genome.

Authors:  L E Hood; M W Hunkapiller; L M Smith
Journal:  Genomics       Date:  1987-11       Impact factor: 5.736

9.  Characterization of an unusual DNA length polymorphism 5' to the human antithrombin III gene.

Authors:  S C Bock; D J Levitan
Journal:  Nucleic Acids Res       Date:  1983-12-20       Impact factor: 16.971

10.  The synthesis of oligonucleotides containing an aliphatic amino group at the 5' terminus: synthesis of fluorescent DNA primers for use in DNA sequence analysis.

Authors:  L M Smith; S Fung; M W Hunkapiller; T J Hunkapiller; L E Hood
Journal:  Nucleic Acids Res       Date:  1985-04-11       Impact factor: 16.971

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  3 in total

1.  A method for parallel, automated, thermal cycling of submicroliter samples.

Authors:  J Nakane; D Broemeling; R Donaldson; A Marziali; T D Willis; M O'Keefe; R W Davis
Journal:  Genome Res       Date:  2001-03       Impact factor: 9.043

2.  Automated one-step DNA sequencing based on nanoliter reaction volumes and capillary electrophoresis.

Authors:  H M Pang; E S Yeung
Journal:  Nucleic Acids Res       Date:  2000-08-01       Impact factor: 16.971

3.  Cryocrystallography in capillaries: critical glycerol concentrations and cooling rates.

Authors:  Matthew Warkentin; Valentina Stanislavskaia; Katherine Hammes; Robert E Thorne
Journal:  J Appl Crystallogr       Date:  2008-07-01       Impact factor: 3.304

  3 in total

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