Literature DB >> 18173237

Building a Parallel Metabolism within the Cell.

Aleksandra Filipovska1, Oliver Rackham.   

Abstract

One of the key aims of synthetic biology is to engineer artificial processes inside living cells. This requires components that interact in a predictable manner, both with each other and with existing cellular systems. However, the activity of many components is constrained by their interactions with other cellular molecules and often their roles in maintaining cell health. To escape this limitation, researchers are pursuing an "orthogonal" approach, building a parallel metabolism within the cell. Components of this parallel metabolism can be sourced from evolutionarily distant species or reengineered from existing cellular molecules by using rational design and directed evolution. These approaches allow the study of basic principles in cell biology and the engineering of cells that can function as environmental sensors, simple computers, and drug factories.

Year:  2008        PMID: 18173237     DOI: 10.1021/cb700185e

Source DB:  PubMed          Journal:  ACS Chem Biol        ISSN: 1554-8929            Impact factor:   5.100


  10 in total

Review 1.  The second wave of synthetic biology: from modules to systems.

Authors:  Priscilla E M Purnick; Ron Weiss
Journal:  Nat Rev Mol Cell Biol       Date:  2009-06       Impact factor: 94.444

Review 2.  The challenges of informatics in synthetic biology: from biomolecular networks to artificial organisms.

Authors:  Gil Alterovitz; Taro Muso; Marco F Ramoni
Journal:  Brief Bioinform       Date:  2009-11-11       Impact factor: 11.622

3.  Modular electron transfer circuits for synthetic biology: insulation of an engineered biohydrogen pathway.

Authors:  Christina M Agapakis; Pamela A Silver
Journal:  Bioeng Bugs       Date:  2010 Nov-Dec

4.  A universal code for RNA recognition by PUF proteins.

Authors:  Aleksandra Filipovska; Muhammad F M Razif; Karoline K A Nygård; Oliver Rackham
Journal:  Nat Chem Biol       Date:  2011-05-15       Impact factor: 15.040

5.  Pentatricopeptide repeats: modular blocks for building RNA-binding proteins.

Authors:  Aleksandra Filipovska; Oliver Rackham
Journal:  RNA Biol       Date:  2013-04-23       Impact factor: 4.652

6.  Directed evolution as a powerful synthetic biology tool.

Authors:  Ryan E Cobb; Ning Sun; Huimin Zhao
Journal:  Methods       Date:  2012-03-23       Impact factor: 3.608

7.  In silico evolution of nucleic acid-binding proteins from a nonfunctional scaffold.

Authors:  Samuel A Raven; Blake Payne; Mitchell Bruce; Aleksandra Filipovska; Oliver Rackham
Journal:  Nat Chem Biol       Date:  2022-02-24       Impact factor: 16.174

Review 8.  Engineering reduced evolutionary potential for synthetic biology.

Authors:  Brian A Renda; Michael J Hammerling; Jeffrey E Barrick
Journal:  Mol Biosyst       Date:  2014-02-21

9.  Targeted editing and evolution of engineered ribosomes in vivo by filtered editing.

Authors:  Felix Radford; Shane D Elliott; Alanna Schepartz; Farren J Isaacs
Journal:  Nat Commun       Date:  2022-01-10       Impact factor: 14.919

10.  A man-made ATP-binding protein evolved independent of nature causes abnormal growth in bacterial cells.

Authors:  Joshua M Stomel; James W Wilson; Megan A León; Phillip Stafford; John C Chaput
Journal:  PLoS One       Date:  2009-10-08       Impact factor: 3.240

  10 in total

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