Literature DB >> 17551014

Synthetic ecosystems based on airborne inter- and intrakingdom communication.

Wilfried Weber1, Marie Daoud-El Baba, Martin Fussenegger.   

Abstract

Intercellular communication within an organism, between populations, or across species and kingdoms forms the basis of many ecosystems in which organisms coexist through symbiotic, parasitic, or predator-prey relationships. Using multistep airborne communication and signal transduction, we present synthetic ecosystems within a mammalian cell population, in mice, or across species and kingdoms. Inter- and intrakingdom communication was enabled by using sender cells that produce volatile aldehydes, small vitamin-derived molecules, or antibiotics that diffuse, by gas or liquid phase, to receiver cells and induce the expression of specific target genes. Intercellular and cross-kingdom communication was shown to enable quorum sensing between and among mammalian cells, bacteria, yeast, and plants, resulting in precise spatiotemporal control of IFN-beta production. Interconnection of bacterial, yeast, and mammalian cell signaling enabled the construction of multistep signal transduction and processing networks as well as the design of synthetic ecosystems that mimic fundamental coexistence patterns in nature, including symbiosis, parasitism, and oscillating predator-prey interactions.

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Year:  2007        PMID: 17551014      PMCID: PMC1886003          DOI: 10.1073/pnas.0701382104

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  24 in total

1.  Defensins and host defense.

Authors:  T Ganz
Journal:  Science       Date:  1999-10-15       Impact factor: 47.728

2.  A temperature-regulated replicon-based DNA expression system.

Authors:  M Boorsma; L Nieba; D Koller; M F Bachmann; J E Bailey; W A Renner
Journal:  Nat Biotechnol       Date:  2000-04       Impact factor: 54.908

3.  Programmed population control by cell-cell communication and regulated killing.

Authors:  Lingchong You; Robert Sidney Cox; Ron Weiss; Frances H Arnold
Journal:  Nature       Date:  2004-04-04       Impact factor: 49.962

4.  Asymmetric coevolutionary networks facilitate biodiversity maintenance.

Authors:  Jordi Bascompte; Pedro Jordano; Jens M Olesen
Journal:  Science       Date:  2006-04-21       Impact factor: 47.728

Review 5.  Ecological networks and their fragility.

Authors:  José M Montoya; Stuart L Pimm; Ricard V Solé
Journal:  Nature       Date:  2006-07-20       Impact factor: 49.962

6.  SAMY, a novel mammalian reporter gene derived from Bacillus stearothermophilus alpha-amylase.

Authors:  Stefan Schlatter; Markus Rimann; Jens Kelm; Martin Fussenegger
Journal:  Gene       Date:  2002-01-09       Impact factor: 3.688

7.  Artificial cell-cell communication in yeast Saccharomyces cerevisiae using signaling elements from Arabidopsis thaliana.

Authors:  Ming-Tang Chen; Ron Weiss
Journal:  Nat Biotechnol       Date:  2005-11-20       Impact factor: 54.908

8.  Relationship between acetaldehyde levels and cell survival in ethanol-metabolizing hepatoma cells.

Authors:  Dahn L Clemens; Andrew Forman; Thomas R Jerrells; Michael F Sorrell; Dean J Tuma
Journal:  Hepatology       Date:  2002-05       Impact factor: 17.425

9.  Streptogramin-based gene regulation systems for mammalian cells.

Authors:  M Fussenegger; R P Morris; C Fux; M Rimann; B von Stockar; C J Thompson; J E Bailey
Journal:  Nat Biotechnol       Date:  2000-11       Impact factor: 54.908

10.  A synthetic time-delay circuit in mammalian cells and mice.

Authors:  Wilfried Weber; Jörg Stelling; Markus Rimann; Bettina Keller; Marie Daoud-El Baba; Cornelia C Weber; Dominique Aubel; Martin Fussenegger
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-12       Impact factor: 11.205

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  67 in total

1.  Tunable synthetic phenotypic diversification on Waddington's landscape through autonomous signaling.

Authors:  Ryoji Sekine; Masayuki Yamamura; Shotaro Ayukawa; Kana Ishimatsu; Satoru Akama; Masahiro Takinoue; Masami Hagiya; Daisuke Kiga
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-24       Impact factor: 11.205

2.  Programmable single-cell mammalian biocomputers.

Authors:  Simon Ausländer; David Ausländer; Marius Müller; Markus Wieland; Martin Fussenegger
Journal:  Nature       Date:  2012-07-05       Impact factor: 49.962

3.  Distributed biological computation with multicellular engineered networks.

Authors:  Sergi Regot; Javier Macia; Núria Conde; Kentaro Furukawa; Jimmy Kjellén; Tom Peeters; Stefan Hohmann; Eulàlia de Nadal; Francesc Posas; Ricard Solé
Journal:  Nature       Date:  2010-12-08       Impact factor: 49.962

Review 4.  Exploiting plug-and-play synthetic biology for drug discovery and production in microorganisms.

Authors:  Marnix H Medema; Rainer Breitling; Roel Bovenberg; Eriko Takano
Journal:  Nat Rev Microbiol       Date:  2010-12-29       Impact factor: 60.633

Review 5.  Foundations for the design and implementation of synthetic genetic circuits.

Authors:  Adrian L Slusarczyk; Allen Lin; Ron Weiss
Journal:  Nat Rev Genet       Date:  2012-05-18       Impact factor: 53.242

Review 6.  The second wave of synthetic biology: from modules to systems.

Authors:  Priscilla E M Purnick; Ron Weiss
Journal:  Nat Rev Mol Cell Biol       Date:  2009-06       Impact factor: 94.444

Review 7.  Harnessing nature's toolbox: regulatory elements for synthetic biology.

Authors:  Patrick M Boyle; Pamela A Silver
Journal:  J R Soc Interface       Date:  2009-03-04       Impact factor: 4.118

8.  Self-sufficient control of urate homeostasis in mice by a synthetic circuit.

Authors:  Christian Kemmer; Marc Gitzinger; Marie Daoud-El Baba; Valentin Djonov; Jörg Stelling; Martin Fussenegger
Journal:  Nat Biotechnol       Date:  2010-03-28       Impact factor: 54.908

9.  Small-molecule inducible transcriptional control in mammalian cells.

Authors:  Aarti Doshi; Fatemeh Sadeghi; Navin Varadarajan; Patrick C Cirino
Journal:  Crit Rev Biotechnol       Date:  2020-08-30       Impact factor: 8.429

Review 10.  Synthesizing biomolecule-based Boolean logic gates.

Authors:  Takafumi Miyamoto; Shiva Razavi; Robert DeRose; Takanari Inoue
Journal:  ACS Synth Biol       Date:  2013-02-15       Impact factor: 5.110

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