Literature DB >> 21189477

Exploiting plug-and-play synthetic biology for drug discovery and production in microorganisms.

Marnix H Medema1, Rainer Breitling, Roel Bovenberg, Eriko Takano.   

Abstract

One of the most promising applications of synthetic biology is the biosynthesis of new drugs from secondary metabolites. Here, we survey a wide range of strategies that control the activity of biosynthetic modules in the cell in space and time, and illustrate how these strategies can be used to design efficient cellular synthetic production systems. Re-engineered versions of secondary metabolite biosynthetic pathways identified from any genomic sequence can then be inserted into these systems in a plug-and-play fashion.

Mesh:

Year:  2010        PMID: 21189477     DOI: 10.1038/nrmicro2478

Source DB:  PubMed          Journal:  Nat Rev Microbiol        ISSN: 1740-1526            Impact factor:   60.633


  74 in total

Review 1.  Compartmentalization and transport in beta-lactam antibiotics biosynthesis.

Authors:  M E Evers; H Trip; M A van den Berg; R A L Bovenberg; A J M Driessen
Journal:  Adv Biochem Eng Biotechnol       Date:  2004       Impact factor: 2.635

2.  Synthetic ecosystems based on airborne inter- and intrakingdom communication.

Authors:  Wilfried Weber; Marie Daoud-El Baba; Martin Fussenegger
Journal:  Proc Natl Acad Sci U S A       Date:  2007-06-05       Impact factor: 11.205

Review 3.  Total biosynthesis: in vitro reconstitution of polyketide and nonribosomal peptide pathways.

Authors:  Elizabeth S Sattely; Michael A Fischbach; Christopher T Walsh
Journal:  Nat Prod Rep       Date:  2008-05-23       Impact factor: 13.423

4.  Engineering static and dynamic control of synthetic pathways.

Authors:  William J Holtz; Jay D Keasling
Journal:  Cell       Date:  2010-01-08       Impact factor: 41.582

5.  Reengineering orthogonally selective riboswitches.

Authors:  Neil Dixon; John N Duncan; Torsten Geerlings; Mark S Dunstan; John E G McCarthy; David Leys; Jason Micklefield
Journal:  Proc Natl Acad Sci U S A       Date:  2010-01-26       Impact factor: 11.205

6.  Biosynthesis of complex polyketides in a metabolically engineered strain of E. coli.

Authors:  B A Pfeifer; S J Admiraal; H Gramajo; D E Cane; C Khosla
Journal:  Science       Date:  2001-03-02       Impact factor: 47.728

7.  Constructing multispecies biofilms with defined compositions by sequential deposition of bacteria.

Authors:  Bryan A Stubblefield; Kristen E Howery; Bianca N Islam; Ariel J Santiago; Wendy E Cardenas; Eric S Gilbert
Journal:  Appl Microbiol Biotechnol       Date:  2010-02-24       Impact factor: 4.813

8.  AraC regulatory protein mutants with altered effector specificity.

Authors:  Shuang-Yan Tang; Hossein Fazelinia; Patrick C Cirino
Journal:  J Am Chem Soc       Date:  2008-03-21       Impact factor: 15.419

9.  A proteomics approach to discovering natural products and their biosynthetic pathways.

Authors:  Stefanie B Bumpus; Bradley S Evans; Paul M Thomas; Ioanna Ntai; Neil L Kelleher
Journal:  Nat Biotechnol       Date:  2009-09-20       Impact factor: 54.908

10.  A synthetic Escherichia coli predator-prey ecosystem.

Authors:  Frederick K Balagaddé; Hao Song; Jun Ozaki; Cynthia H Collins; Matthew Barnet; Frances H Arnold; Stephen R Quake; Lingchong You
Journal:  Mol Syst Biol       Date:  2008-04-15       Impact factor: 11.429

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  62 in total

Review 1.  Computational tools for the synthetic design of biochemical pathways.

Authors:  Marnix H Medema; Renske van Raaphorst; Eriko Takano; Rainer Breitling
Journal:  Nat Rev Microbiol       Date:  2012-01-23       Impact factor: 60.633

Review 2.  Taxonomy, Physiology, and Natural Products of Actinobacteria.

Authors:  Essaid Ait Barka; Parul Vatsa; Lisa Sanchez; Nathalie Gaveau-Vaillant; Cedric Jacquard; Jan P Meier-Kolthoff; Hans-Peter Klenk; Christophe Clément; Yder Ouhdouch; Gilles P van Wezel
Journal:  Microbiol Mol Biol Rev       Date:  2015-11-25       Impact factor: 11.056

Review 3.  Emerging tools for synthetic genome design.

Authors:  Bo-Rahm Lee; Suhyung Cho; Yoseb Song; Sun Chang Kim; Byung-Kwan Cho
Journal:  Mol Cells       Date:  2013-05-02       Impact factor: 5.034

Review 4.  Triggers and cues that activate antibiotic production by actinomycetes.

Authors:  Hua Zhu; Stephanie K Sandiford; Gilles P van Wezel
Journal:  J Ind Microbiol Biotechnol       Date:  2013-08-02       Impact factor: 3.346

5.  Structuring Microbial Metabolic Responses to Multiplexed Stimuli via Self-Organizing Metabolomics Maps.

Authors:  Cody R Goodwin; Brett C Covington; Dagmara K Derewacz; C Ruth McNees; John P Wikswo; John A McLean; Brian O Bachmann
Journal:  Chem Biol       Date:  2015-04-30

6.  Genetic circuit performance under conditions relevant for industrial bioreactors.

Authors:  Felix Moser; Nicolette J Broers; Sybe Hartmans; Alvin Tamsir; Richard Kerkman; Johannes A Roubos; Roel Bovenberg; Christopher A Voigt
Journal:  ACS Synth Biol       Date:  2012-11-05       Impact factor: 5.110

Review 7.  Merging chemical ecology with bacterial genome mining for secondary metabolite discovery.

Authors:  Maria I Vizcaino; Xun Guo; Jason M Crawford
Journal:  J Ind Microbiol Biotechnol       Date:  2013-10-15       Impact factor: 3.346

Review 8.  Genome Mining as New Challenge in Natural Products Discovery.

Authors:  Luisa Albarano; Roberta Esposito; Nadia Ruocco; Maria Costantini
Journal:  Mar Drugs       Date:  2020-04-09       Impact factor: 5.118

9.  Light-Controlled Cell Factories: Employing Photocaged Isopropyl-β-d-Thiogalactopyranoside for Light-Mediated Optimization of lac Promoter-Based Gene Expression and (+)-Valencene Biosynthesis in Corynebacterium glutamicum.

Authors:  Dennis Binder; Jonas Frohwitter; Regina Mahr; Claus Bier; Alexander Grünberger; Anita Loeschcke; Petra Peters-Wendisch; Dietrich Kohlheyer; Jörg Pietruszka; Julia Frunzke; Karl-Erich Jaeger; Volker F Wendisch; Thomas Drepper
Journal:  Appl Environ Microbiol       Date:  2016-09-30       Impact factor: 4.792

10.  Computational approaches to natural product discovery.

Authors:  Marnix H Medema; Michael A Fischbach
Journal:  Nat Chem Biol       Date:  2015-09       Impact factor: 15.040

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