Literature DB >> 21150900

Distributed biological computation with multicellular engineered networks.

Sergi Regot1, Javier Macia, Núria Conde, Kentaro Furukawa, Jimmy Kjellén, Tom Peeters, Stefan Hohmann, Eulàlia de Nadal, Francesc Posas, Ricard Solé.   

Abstract

Ongoing efforts within synthetic and systems biology have been directed towards the building of artificial computational devices using engineered biological units as basic building blocks. Such efforts, inspired in the standard design of electronic circuits, are limited by the difficulties arising from wiring the basic computational units (logic gates) through the appropriate connections, each one to be implemented by a different molecule. Here, we show that there is a logically different form of implementing complex Boolean logic computations that reduces wiring constraints thanks to a redundant distribution of the desired output among engineered cells. A practical implementation is presented using a library of engineered yeast cells, which can be combined in multiple ways. Each construct defines a logic function and combining cells and their connections allow building more complex synthetic devices. As a proof of principle, we have implemented many logic functions by using just a few engineered cells. Of note, small modifications and combination of those cells allowed for implementing more complex circuits such as a multiplexer or a 1-bit adder with carry, showing the great potential for re-utilization of small parts of the circuit. Our results support the approach of using cellular consortia as an efficient way of engineering complex tasks not easily solvable using single-cell implementations.

Entities:  

Mesh:

Substances:

Year:  2010        PMID: 21150900     DOI: 10.1038/nature09679

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  26 in total

1.  Construction of a genetic toggle switch in Escherichia coli.

Authors:  T S Gardner; C R Cantor; J J Collins
Journal:  Nature       Date:  2000-01-20       Impact factor: 49.962

2.  A synthetic oscillatory network of transcriptional regulators.

Authors:  M B Elowitz; S Leibler
Journal:  Nature       Date:  2000-01-20       Impact factor: 49.962

3.  Synthetic ecosystems based on airborne inter- and intrakingdom communication.

Authors:  Wilfried Weber; Marie Daoud-El Baba; Martin Fussenegger
Journal:  Proc Natl Acad Sci U S A       Date:  2007-06-05       Impact factor: 11.205

4.  Engineered bidirectional communication mediates a consensus in a microbial biofilm consortium.

Authors:  Katie Brenner; David K Karig; Ron Weiss; Frances H Arnold
Journal:  Proc Natl Acad Sci U S A       Date:  2007-10-24       Impact factor: 11.205

Review 5.  The second wave of synthetic biology: from modules to systems.

Authors:  Priscilla E M Purnick; Ron Weiss
Journal:  Nat Rev Mol Cell Biol       Date:  2009-06       Impact factor: 94.444

Review 6.  Engineering microbial consortia: a new frontier in synthetic biology.

Authors:  Katie Brenner; Lingchong You; Frances H Arnold
Journal:  Trends Biotechnol       Date:  2008-07-31       Impact factor: 19.536

Review 7.  Protein molecules as computational elements in living cells.

Authors:  D Bray
Journal:  Nature       Date:  1995-07-27       Impact factor: 49.962

8.  Circuit simulation of genetic networks.

Authors:  H H McAdams; L Shapiro
Journal:  Science       Date:  1995-08-04       Impact factor: 47.728

Review 9.  Rewiring cells: synthetic biology as a tool to interrogate the organizational principles of living systems.

Authors:  Caleb J Bashor; Andrew A Horwitz; Sergio G Peisajovich; Wendell A Lim
Journal:  Annu Rev Biophys       Date:  2010       Impact factor: 12.981

10.  A synthetic Escherichia coli predator-prey ecosystem.

Authors:  Frederick K Balagaddé; Hao Song; Jun Ozaki; Cynthia H Collins; Matthew Barnet; Frances H Arnold; Stephen R Quake; Lingchong You
Journal:  Mol Syst Biol       Date:  2008-04-15       Impact factor: 11.429

View more
  107 in total

1.  Multiplexing Engineered Receptors for Multiparametric Evaluation of Environmental Ligands.

Authors:  Rachel M Hartfield; Kelly A Schwarz; Joseph J Muldoon; Neda Bagheri; Joshua N Leonard
Journal:  ACS Synth Biol       Date:  2017-08-23       Impact factor: 5.110

2.  Programmable single-cell mammalian biocomputers.

Authors:  Simon Ausländer; David Ausländer; Marius Müller; Markus Wieland; Martin Fussenegger
Journal:  Nature       Date:  2012-07-05       Impact factor: 49.962

Review 3.  Engineering ecosystems and synthetic ecologies.

Authors:  Michael T Mee; Harris H Wang
Journal:  Mol Biosyst       Date:  2012-10

Review 4.  Recent advances and opportunities in synthetic logic gates engineering in living cells.

Authors:  Vijai Singh
Journal:  Syst Synth Biol       Date:  2014-08-28

Review 5.  Foundations for the design and implementation of synthetic genetic circuits.

Authors:  Adrian L Slusarczyk; Allen Lin; Ron Weiss
Journal:  Nat Rev Genet       Date:  2012-05-18       Impact factor: 53.242

6.  Bistability and oscillations in co-repressive synthetic microbial consortia.

Authors:  Mehdi Sadeghpour; Alan Veliz-Cuba; Gábor Orosz; Krešimir Josić; Matthew R Bennett
Journal:  Quant Biol       Date:  2017-03-30

7.  Long-term model predictive control of gene expression at the population and single-cell levels.

Authors:  Jannis Uhlendorf; Agnès Miermont; Thierry Delaveau; Gilles Charvin; François Fages; Samuel Bottani; Gregory Batt; Pascal Hersen
Journal:  Proc Natl Acad Sci U S A       Date:  2012-08-14       Impact factor: 11.205

8.  Synthetic biology: Synthetic gene networks that smell.

Authors:  Fahim Farzadfard; Timothy K Lu
Journal:  Nat Chem Biol       Date:  2017-02-15       Impact factor: 15.040

9.  Spatiotemporal dynamics of distributed synthetic genetic circuits.

Authors:  Oleg Kanakov; Tetyana Laptyeva; Lev Tsimring; Mikhail Ivanchenko
Journal:  Physica D       Date:  2016-04-01       Impact factor: 2.300

Review 10.  Synthesizing biomolecule-based Boolean logic gates.

Authors:  Takafumi Miyamoto; Shiva Razavi; Robert DeRose; Takanari Inoue
Journal:  ACS Synth Biol       Date:  2013-02-15       Impact factor: 5.110

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.