Literature DB >> 20080719

Stereoelectronic and steric effects in side chains preorganize a protein main chain.

Matthew D Shoulders1, Kenneth A Satyshur, Katrina T Forest, Ronald T Raines.   

Abstract

Preorganization is shown to endow a protein with extraordinary conformational stability. This preorganization is achieved by installing side-chain substituents that impose stereoelectronic and steric effects that restrict main-chain torsion angles. Replacing proline residues in (ProProGly)(7) collagen strands with 4-fluoroproline and 4-methylproline leads to the most stable known triple helices, having T ( m ) values that are increased by > 50 degrees C. Differential scanning calorimetry data indicate an entropic basis to the hyperstability, as expected from an origin in preorganization. Structural data at a resolution of 1.21 A reveal a prototypical triple helix with insignificant deviations to its main chain, even though 2/3 of the residues are nonnatural. Thus, preorganization of a main chain by subtle changes to side chains can confer extraordinary conformational stability upon a protein without perturbing its structure.

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Year:  2009        PMID: 20080719      PMCID: PMC2818912          DOI: 10.1073/pnas.0909592107

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  59 in total

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4.  Structural bases of collagen stabilization induced by proline hydroxylation.

Authors:  L Vitagliano; R Berisio; L Mazzarella; A Zagari
Journal:  Biopolymers       Date:  2001-04-15       Impact factor: 2.505

5.  Fluoroprolines as Tools for Protein Design and Engineering We thank Mrs. E. Weyher for skillful technical assistance in spectroscopic analyses and Mrs. W. Wenger for her excellent technical assistance in protein preparation. We are indebted to Dr. R. Golbik for providing us with barstar plasmid and protocols for its isolation and purification.

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8.  Fluorinated Coiled-Coil Proteins Prepared In Vivo Display Enhanced Thermal and Chemical Stability This work was supported by a grant from the U.S. Army Research Office. Y. Tang is supported by a Whitaker Graduate Research Fellowship. We thank Dr. Gary Hathaway for performing matrix-assisted laser desorption/ionization analyses.

Authors:  Yi Tang; Giovanna Ghirlanda; Wendy A. Petka; Tadashi Nakajima; William F. DeGrado; David A. Tirrell
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9.  A hyperstable collagen mimic.

Authors:  S K Holmgren; L E Bretscher; K M Taylor; R T Raines
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  48 in total

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Review 3.  Designing protein-based biomaterials for medical applications.

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Review 8.  Histones: at the crossroads of peptide and protein chemistry.

Authors:  Manuel M Müller; Tom W Muir
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9.  'Clickable lectins': bioorthogonal reactive handles facilitate the directed conjugation of lectins in a modular fashion.

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10.  Stereochemical determinants of C-terminal specificity in PDZ peptide-binding domains: a novel contribution of the carboxylate-binding loop.

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Journal:  J Biol Chem       Date:  2012-12-15       Impact factor: 5.157

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