Literature DB >> 19347910

Efforts toward the direct experimental characterization of enzyme microenvironments: tyrosine100 in dihydrofolate reductase.

Dan Groff1, Megan C Thielges, Susan Cellitti, Peter G Schultz, Floyd E Romesberg.   

Abstract

State secrets: Site-specific deuteration and FTIR studies reveal that Tyr100 in dihydrofolate reductase plays an important role in catalysis, with a strong electrostatic coupling occurring between Tyr100 and the charge that develops in the hydride-transfer transition state (see picture, NADP(+) purple, Tyr100 green). However, relaying correlated motions that facilitate catalysis from distal sites of the protein to the hydride donor may also be involved.

Entities:  

Mesh:

Substances:

Year:  2009        PMID: 19347910      PMCID: PMC3166254          DOI: 10.1002/anie.200806239

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  24 in total

1.  Conformational substates modulate hydride transfer in dihydrofolate reductase.

Authors:  Ian F Thorpe; Charles L Brooks
Journal:  J Am Chem Soc       Date:  2005-09-21       Impact factor: 15.419

2.  Efforts toward developing direct probes of protein dynamics.

Authors:  Matthew E Cremeens; Hiroshi Fujisaki; Yong Zhang; Jörg Zimmermann; Laura B Sagle; Shigeo Matsuda; Philip E Dawson; John E Straub; Floyd E Romesberg
Journal:  J Am Chem Soc       Date:  2006-05-10       Impact factor: 15.419

3.  The dynamic energy landscape of dihydrofolate reductase catalysis.

Authors:  David D Boehr; Dan McElheny; H Jane Dyson; Peter E Wright
Journal:  Science       Date:  2006-09-15       Impact factor: 47.728

4.  Coordinated effects of distal mutations on environmentally coupled tunneling in dihydrofolate reductase.

Authors:  Lin Wang; Nina M Goodey; Stephen J Benkovic; Amnon Kohen
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-10       Impact factor: 11.205

5.  A genetically encoded photocaged tyrosine.

Authors:  Alexander Deiters; Dan Groff; Youngha Ryu; Jianming Xie; Peter G Schultz
Journal:  Angew Chem Int Ed Engl       Date:  2006-04-21       Impact factor: 15.336

6.  Redox-coupled dynamics and folding in cytochrome c.

Authors:  Laura B Sagle; Jörg Zimmermann; Shigeo Matsuda; Philip E Dawson; Floyd E Romesberg
Journal:  J Am Chem Soc       Date:  2006-06-21       Impact factor: 15.419

7.  Functional waters in intraprotein proton transfer monitored by FTIR difference spectroscopy.

Authors:  Florian Garczarek; Klaus Gerwert
Journal:  Nature       Date:  2005-11-09       Impact factor: 49.962

8.  Infrared line shape of an alpha-carbon deuterium-labeled amino acid.

Authors:  Carrie S Kinnaman; Matthew E Cremeens; Floyd E Romesberg; Steven A Corcelli
Journal:  J Am Chem Soc       Date:  2006-10-18       Impact factor: 15.419

Review 9.  Structure, dynamics, and catalytic function of dihydrofolate reductase.

Authors:  Jason R Schnell; H Jane Dyson; Peter E Wright
Journal:  Annu Rev Biophys Biomol Struct       Date:  2004

10.  Construction and evaluation of the kinetic scheme associated with dihydrofolate reductase from Escherichia coli.

Authors:  C A Fierke; K A Johnson; S J Benkovic
Journal:  Biochemistry       Date:  1987-06-30       Impact factor: 3.162

View more
  13 in total

Review 1.  Vibrational Spectroscopic Map, Vibrational Spectroscopy, and Intermolecular Interaction.

Authors:  Carlos R Baiz; Bartosz Błasiak; Jens Bredenbeck; Minhaeng Cho; Jun-Ho Choi; Steven A Corcelli; Arend G Dijkstra; Chi-Jui Feng; Sean Garrett-Roe; Nien-Hui Ge; Magnus W D Hanson-Heine; Jonathan D Hirst; Thomas L C Jansen; Kijeong Kwac; Kevin J Kubarych; Casey H Londergan; Hiroaki Maekawa; Mike Reppert; Shinji Saito; Santanu Roy; James L Skinner; Gerhard Stock; John E Straub; Megan C Thielges; Keisuke Tominaga; Andrei Tokmakoff; Hajime Torii; Lu Wang; Lauren J Webb; Martin T Zanni
Journal:  Chem Rev       Date:  2020-06-29       Impact factor: 60.622

Review 2.  Site-specific labeling of proteins with NMR-active unnatural amino acids.

Authors:  David H Jones; Susan E Cellitti; Xueshi Hao; Qiong Zhang; Michael Jahnz; Daniel Summerer; Peter G Schultz; Tetsuo Uno; Bernhard H Geierstanger
Journal:  J Biomol NMR       Date:  2009-08-09       Impact factor: 2.835

Review 3.  Beyond the canonical 20 amino acids: expanding the genetic lexicon.

Authors:  Travis S Young; Peter G Schultz
Journal:  J Biol Chem       Date:  2010-02-10       Impact factor: 5.157

Review 4.  At the Interface of Chemical and Biological Synthesis: An Expanded Genetic Code.

Authors:  Han Xiao; Peter G Schultz
Journal:  Cold Spring Harb Perspect Biol       Date:  2016-09-01       Impact factor: 10.005

5.  Site-Specific 1D and 2D IR Spectroscopy to Characterize the Conformations and Dynamics of Protein Molecular Recognition.

Authors:  Sashary Ramos; Megan C Thielges
Journal:  J Phys Chem B       Date:  2019-03-21       Impact factor: 2.991

6.  Escherichia coli dihydrofolate reductase catalyzed proton and hydride transfers: temporal order and the roles of Asp27 and Tyr100.

Authors:  C Tony Liu; Kevin Francis; Joshua P Layfield; Xinyi Huang; Sharon Hammes-Schiffer; Amnon Kohen; Stephen J Benkovic
Journal:  Proc Natl Acad Sci U S A       Date:  2014-12-01       Impact factor: 11.205

7.  A new strategy to photoactivate green fluorescent protein.

Authors:  Dan Groff; Feng Wang; Steffen Jockusch; Nicholas J Turro; Peter G Schultz
Journal:  Angew Chem Int Ed Engl       Date:  2010-10-11       Impact factor: 15.336

Review 8.  Synthesis at the interface of chemistry and biology.

Authors:  Xu Wu; Peter G Schultz
Journal:  J Am Chem Soc       Date:  2009-09-09       Impact factor: 15.419

9.  Enhancing the efficiency and regioselectivity of P450 oxidation catalysts by unnatural amino acid mutagenesis.

Authors:  Joshua N Kolev; Jacqueline M Zaengle; Rajesh Ravikumar; Rudi Fasan
Journal:  Chembiochem       Date:  2014-04-01       Impact factor: 3.164

Review 10.  Playing with the Molecules of Life.

Authors:  Douglas D Young; Peter G Schultz
Journal:  ACS Chem Biol       Date:  2018-03-02       Impact factor: 5.100

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.