Literature DB >> 16973882

The dynamic energy landscape of dihydrofolate reductase catalysis.

David D Boehr1, Dan McElheny, H Jane Dyson, Peter E Wright.   

Abstract

We used nuclear magnetic resonance relaxation dispersion to characterize higher energy conformational substates of Escherichia coli dihydrofolate reductase. Each intermediate in the catalytic cycle samples low-lying excited states whose conformations resemble the ground-state structures of preceding and following intermediates. Substrate and cofactor exchange occurs through these excited substates. The maximum hydride transfer and steady-state turnover rates are governed by the dynamics of transitions between ground and excited states of the intermediates. Thus, the modulation of the energy landscape by the bound ligands funnels the enzyme through its reaction cycle along a preferred kinetic path.

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Year:  2006        PMID: 16973882     DOI: 10.1126/science.1130258

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  410 in total

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2.  Temperature dependence of protein motions in a thermophilic dihydrofolate reductase and its relationship to catalytic efficiency.

Authors:  Olayinka A Oyeyemi; Kevin M Sours; Thomas Lee; Katheryn A Resing; Natalie G Ahn; Judith P Klinman
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-13       Impact factor: 11.205

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4.  Structural and electrostatic asymmetry at the active site in typical and atypical peroxiredoxin dimers.

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5.  Robust mechanosensing and tension generation by myosin VI.

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Journal:  J Mol Biol       Date:  2010-10-21       Impact factor: 5.469

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Journal:  J Biol Chem       Date:  2020-07-31       Impact factor: 5.157

7.  Computational approach for ranking mutant enzymes according to catalytic reaction rates.

Authors:  Malika Kumarasiri; Gregory A Baker; Alexander V Soudackov; Sharon Hammes-Schiffer
Journal:  J Phys Chem B       Date:  2009-03-19       Impact factor: 2.991

Review 8.  Enzyme (re)design: lessons from natural evolution and computation.

Authors:  John A Gerlt; Patricia C Babbitt
Journal:  Curr Opin Chem Biol       Date:  2009-02-23       Impact factor: 8.822

9.  Solution structure of inhibitor-free human metalloelastase (MMP-12) indicates an internal conformational adjustment.

Authors:  Rajagopalan Bhaskaran; Mark O Palmier; Nusayba A Bagegni; Xiangyang Liang; Steven R Van Doren
Journal:  J Mol Biol       Date:  2007-10-16       Impact factor: 5.469

10.  Directed Evolution as a Probe of Rate Promoting Vibrations Introduced via Mutational Change.

Authors:  Xi Chen; Steven D Schwartz
Journal:  Biochemistry       Date:  2018-03-22       Impact factor: 3.162

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