Literature DB >> 29345901

Playing with the Molecules of Life.

Douglas D Young1, Peter G Schultz2.   

Abstract

Our understanding of the complex molecular processes of living organisms at the molecular level is growing exponentially. This knowledge, together with a powerful arsenal of tools for manipulating the structures of macromolecules, is allowing chemists to to harness and reprogram the cellular machinery in ways previously unimaged. Here we review one example in which the genetic code itself has been expanded with new building blocks that allow us to probe and manipulate the structures and functions of proteins with unprecedented precision.

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Year:  2018        PMID: 29345901      PMCID: PMC6061972          DOI: 10.1021/acschembio.7b00974

Source DB:  PubMed          Journal:  ACS Chem Biol        ISSN: 1554-8929            Impact factor:   5.100


  286 in total

1.  Adaptation of an orthogonal archaeal leucyl-tRNA and synthetase pair for four-base, amber, and opal suppression.

Authors:  J Christopher Anderson; Peter G Schultz
Journal:  Biochemistry       Date:  2003-08-19       Impact factor: 3.162

2.  Interpretation of p-cyanophenylalanine fluorescence in proteins in terms of solvent exposure and contribution of side-chain quenchers: a combined fluorescence, IR and molecular dynamics study.

Authors:  Humeyra Taskent-Sezgin; Juah Chung; Vadim Patsalo; Shigeki J Miyake-Stoner; Andrew M Miller; Scott H Brewer; Ryan A Mehl; David F Green; Daniel P Raleigh; Isaac Carrico
Journal:  Biochemistry       Date:  2009-09-29       Impact factor: 3.162

3.  Facile Removal of Leader Peptides from Lanthipeptides by Incorporation of a Hydroxy Acid.

Authors:  Noah A Bindman; Silvia C Bobeica; Wenshe R Liu; Wilfred A van der Donk
Journal:  J Am Chem Soc       Date:  2015-06-01       Impact factor: 15.419

4.  Exploring the potential impact of an expanded genetic code on protein function.

Authors:  Han Xiao; Fariborz Nasertorabi; Sei-Hyun Choi; Gye Won Han; Sean A Reed; Raymond C Stevens; Peter G Schultz
Journal:  Proc Natl Acad Sci U S A       Date:  2015-05-18       Impact factor: 11.205

5.  Adding L-3-(2-Naphthyl)alanine to the genetic code of E. coli.

Authors:  Lei Wang; Ansgar Brock; Peter G Schultz
Journal:  J Am Chem Soc       Date:  2002-03-06       Impact factor: 15.419

6.  A semisynthetic organism engineered for the stable expansion of the genetic alphabet.

Authors:  Yorke Zhang; Brian M Lamb; Aaron W Feldman; Anne Xiaozhou Zhou; Thomas Lavergne; Lingjun Li; Floyd E Romesberg
Journal:  Proc Natl Acad Sci U S A       Date:  2017-01-23       Impact factor: 11.205

7.  Genetic encoding of a bicyclo[6.1.0]nonyne-charged amino acid enables fast cellular protein imaging by metal-free ligation.

Authors:  Annika Borrmann; Sigrid Milles; Tilman Plass; Jan Dommerholt; Jorge M M Verkade; Manfred Wiessler; Carsten Schultz; Jan C M van Hest; Floris L van Delft; Edward A Lemke
Journal:  Chembiochem       Date:  2012-09-03       Impact factor: 3.164

8.  Genetic code expansion enables live-cell and super-resolution imaging of site-specifically labeled cellular proteins.

Authors:  Chayasith Uttamapinant; Jonathan D Howe; Kathrin Lang; Václav Beránek; Lloyd Davis; Mohan Mahesh; Nicholas P Barry; Jason W Chin
Journal:  J Am Chem Soc       Date:  2015-04-01       Impact factor: 15.419

9.  Expanding the genetic code of yeast for incorporation of diverse unnatural amino acids via a pyrrolysyl-tRNA synthetase/tRNA pair.

Authors:  Susan M Hancock; Rajendra Uprety; Alexander Deiters; Jason W Chin
Journal:  J Am Chem Soc       Date:  2010-10-27       Impact factor: 15.419

10.  Intein Zymogens: Conditional Assembly and Splicing of Split Inteins via Targeted Proteolysis.

Authors:  Josef A Gramespacher; Adam J Stevens; Duy P Nguyen; Jason W Chin; Tom W Muir
Journal:  J Am Chem Soc       Date:  2017-06-07       Impact factor: 15.419

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  84 in total

1.  A "Quenchergenic" Chemoselective Protein Labeling Strategy.

Authors:  Partha Sarathi Addy; Yunan Zheng; James S Italia; Abhishek Chatterjee
Journal:  Chembiochem       Date:  2019-05-03       Impact factor: 3.164

Review 2.  Reprogramming the genetic code.

Authors:  Daniel de la Torre; Jason W Chin
Journal:  Nat Rev Genet       Date:  2020-12-14       Impact factor: 53.242

Review 3.  Trends in peptide drug discovery.

Authors:  Markus Muttenthaler; Glenn F King; David J Adams; Paul F Alewood
Journal:  Nat Rev Drug Discov       Date:  2021-02-03       Impact factor: 84.694

4.  Electron-deficient p-benzoyl-l-phenylalanine derivatives increase covalent chemical capture yields for protein-protein interactions.

Authors:  Cassandra M Joiner; Meghan E Breen; Anna K Mapp
Journal:  Protein Sci       Date:  2019-04-29       Impact factor: 6.725

5.  Genetic Encoding of a Bioconjugation Handle for [2+2+2] Cycloaddition Reactions.

Authors:  Christopher R Travis; Elizabeth A King; Gillian H Gaunt; Douglas D Young
Journal:  Chembiochem       Date:  2019-10-17       Impact factor: 3.164

Review 6.  Hijacking Translation Initiation for Synthetic Biology.

Authors:  Jeffery M Tharp; Natalie Krahn; Umesh Varshney; Dieter Söll
Journal:  Chembiochem       Date:  2020-03-02       Impact factor: 3.164

7.  Expanding the genetic code of the human hematopoietic system.

Authors:  Sida Shao; Minseob Koh; Peter G Schultz
Journal:  Proc Natl Acad Sci U S A       Date:  2020-04-06       Impact factor: 11.205

8.  Rapid discovery and evolution of orthogonal aminoacyl-tRNA synthetase-tRNA pairs.

Authors:  Daniele Cervettini; Shan Tang; Stephen D Fried; Julian C W Willis; Louise F H Funke; Lucy J Colwell; Jason W Chin
Journal:  Nat Biotechnol       Date:  2020-04-13       Impact factor: 54.908

9.  Resurrecting the Bacterial Tyrosyl-tRNA Synthetase/tRNA Pair for Expanding the Genetic Code of Both E. coli and Eukaryotes.

Authors:  James S Italia; Christopher Latour; Chester J J Wrobel; Abhishek Chatterjee
Journal:  Cell Chem Biol       Date:  2018-08-02       Impact factor: 8.116

10.  Site-specific chemical fatty-acylation for gain-of-function analysis of protein S-palmitoylation in live cells.

Authors:  Yumeng Li; Shushu Wang; Yanchi Chen; Manjia Li; Xiaoshu Dong; Howard C Hang; Tao Peng
Journal:  Chem Commun (Camb)       Date:  2020-10-23       Impact factor: 6.222

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