Literature DB >> 19669620

Site-specific labeling of proteins with NMR-active unnatural amino acids.

David H Jones1, Susan E Cellitti, Xueshi Hao, Qiong Zhang, Michael Jahnz, Daniel Summerer, Peter G Schultz, Tetsuo Uno, Bernhard H Geierstanger.   

Abstract

A large number of amino acids other than the canonical amino acids can now be easily incorporated in vivo into proteins at genetically encoded positions. The technology requires an orthogonal tRNA/aminoacyl-tRNA synthetase pair specific for the unnatural amino acid that is added to the media while a TAG amber or frame shift codon specifies the incorporation site in the protein to be studied. These unnatural amino acids can be isotopically labeled and provide unique opportunities for site-specific labeling of proteins for NMR studies. In this perspective, we discuss these opportunities including new photocaged unnatural amino acids, outline usage of metal chelating and spin-labeled unnatural amino acids and expand the approach to in-cell NMR experiments.

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Year:  2009        PMID: 19669620     DOI: 10.1007/s10858-009-9365-4

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  89 in total

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Journal:  J Magn Reson       Date:  2001-07       Impact factor: 2.229

Review 2.  A new spin on protein dynamics.

Authors:  Linda Columbus; Wayne L Hubbell
Journal:  Trends Biochem Sci       Date:  2002-06       Impact factor: 13.807

Review 3.  Expanding the genetic code.

Authors:  Lei Wang; Jianming Xie; Peter G Schultz
Journal:  Annu Rev Biophys Biomol Struct       Date:  2006

4.  Recognition of a CXCR4 sulfotyrosine by the chemokine stromal cell-derived factor-1alpha (SDF-1alpha/CXCL12).

Authors:  Christopher T Veldkamp; Christoph Seibert; Francis C Peterson; Thomas P Sakmar; Brian F Volkman
Journal:  J Mol Biol       Date:  2006-05-11       Impact factor: 5.469

Review 5.  Use of 19F NMR to probe protein structure and conformational changes.

Authors:  M A Danielson; J J Falke
Journal:  Annu Rev Biophys Biomol Struct       Date:  1996

6.  Expression and nitrogen-15 labeling of proteins for proton and nitrogen-15 nuclear magnetic resonance.

Authors:  D C Muchmore; L P McIntosh; C B Russell; D E Anderson; F W Dahlquist
Journal:  Methods Enzymol       Date:  1989       Impact factor: 1.600

7.  Pyrrolysine encoded by UAG in Archaea: charging of a UAG-decoding specialized tRNA.

Authors:  Gayathri Srinivasan; Carey M James; Joseph A Krzycki
Journal:  Science       Date:  2002-05-24       Impact factor: 47.728

8.  The site-specific incorporation of p-iodo-L-phenylalanine into proteins for structure determination.

Authors:  Jianming Xie; Lei Wang; Ning Wu; Ansgar Brock; Glen Spraggon; Peter G Schultz
Journal:  Nat Biotechnol       Date:  2004-09-19       Impact factor: 54.908

9.  A genetically encoded metabolically stable analogue of phosphotyrosine in Escherichia coli.

Authors:  Jianming Xie; Lubica Supekova; Peter G Schultz
Journal:  ACS Chem Biol       Date:  2007-07-09       Impact factor: 5.100

10.  Genetic incorporation of a metal-ion chelating amino acid into proteins as a biophysical probe.

Authors:  Hyun Soo Lee; Glen Spraggon; Peter G Schultz; Feng Wang
Journal:  J Am Chem Soc       Date:  2009-02-25       Impact factor: 15.419

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  27 in total

Review 1.  Protein-based tumor molecular imaging probes.

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Journal:  Amino Acids       Date:  2010-03-17       Impact factor: 3.520

2.  Two-dimensional NMR and all-atom molecular dynamics of cytochrome P450 CYP119 reveal hidden conformational substates.

Authors:  Jed N Lampe; Relly Brandman; Santhosh Sivaramakrishnan; Paul R Ortiz de Montellano
Journal:  J Biol Chem       Date:  2010-01-22       Impact factor: 5.157

3.  A topical issue: production and labeling of biological macromolecules for NMR investigations.

Authors:  Gerhard Wagner
Journal:  J Biomol NMR       Date:  2010-01       Impact factor: 2.835

Review 4.  Paramagnetic NMR probes for characterization of the dynamic conformations and interactions of oligosaccharides.

Authors:  Koichi Kato; Takumi Yamaguchi
Journal:  Glycoconj J       Date:  2015-06-07       Impact factor: 2.916

Review 5.  Therapeutic applications of an expanded genetic code.

Authors:  Sophie B Sun; Peter G Schultz; Chan Hyuk Kim
Journal:  Chembiochem       Date:  2014-07-18       Impact factor: 3.164

Review 6.  A molecular engineering toolbox for the structural biologist.

Authors:  Galia T Debelouchina; Tom W Muir
Journal:  Q Rev Biophys       Date:  2017-01       Impact factor: 5.318

7.  An NMR strategy for fragment-based ligand screening utilizing a paramagnetic lanthanide probe.

Authors:  Tomohide Saio; Kenji Ogura; Kazumi Shimizu; Masashi Yokochi; Terrence R Burke; Fuyuhiko Inagaki
Journal:  J Biomol NMR       Date:  2011-09-17       Impact factor: 2.835

8.  Peptide and Protein Dynamics and Low-Temperature/DNP Magic Angle Spinning NMR.

Authors:  Qing Zhe Ni; Evgeny Markhasin; Thach V Can; Björn Corzilius; Kong Ooi Tan; Alexander B Barnes; Eugenio Daviso; Yongchao Su; Judith Herzfeld; Robert G Griffin
Journal:  J Phys Chem B       Date:  2017-05-10       Impact factor: 2.991

Review 9.  Isotope labeling for solution and solid-state NMR spectroscopy of membrane proteins.

Authors:  Raffaello Verardi; Nathaniel J Traaseth; Larry R Masterson; Vitaly V Vostrikov; Gianluigi Veglia
Journal:  Adv Exp Med Biol       Date:  2012       Impact factor: 2.622

10.  Structure-based non-canonical amino acid design to covalently crosslink an antibody-antigen complex.

Authors:  Jianqing Xu; Drew Tack; Randall A Hughes; Andrew D Ellington; Jeffrey J Gray
Journal:  J Struct Biol       Date:  2013-05-13       Impact factor: 2.867

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