Literature DB >> 19689159

Synthesis at the interface of chemistry and biology.

Xu Wu1, Peter G Schultz.   

Abstract

As the focus of synthesis increasingly shifts from its historical emphasis on molecular structure to function, improved strategies are clearly required for the generation of molecules with defined physical, chemical, and biological properties. In contrast, living organisms are remarkably adept at producing molecules and molecular assemblies with an impressive array of functions - from enzymes and antibodies to the photosynthetic center. Thus, the marriage of Nature's synthetic strategies, molecules, and biosynthetic machinery with more traditional synthetic approaches might enable the generation of molecules with properties difficult to achieve by chemical strategies alone. Here we illustrate the potential of this approach and overview some opportunities and challenges in the coming years.

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Year:  2009        PMID: 19689159      PMCID: PMC5847295          DOI: 10.1021/ja9026067

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  277 in total

1.  A combinatorial scaffold approach toward kinase-directed heterocycle libraries.

Authors:  Sheng Ding; Nathanael S Gray; Xu Wu; Qiang Ding; Peter G Schultz
Journal:  J Am Chem Soc       Date:  2002-02-27       Impact factor: 15.419

Review 2.  Gene regulation by riboswitches.

Authors:  Maumita Mandal; Ronald R Breaker
Journal:  Nat Rev Mol Cell Biol       Date:  2004-06       Impact factor: 94.444

Review 3.  Polyketide and nonribosomal peptide antibiotics: modularity and versatility.

Authors:  Christopher T Walsh
Journal:  Science       Date:  2004-03-19       Impact factor: 47.728

4.  Combinatorial and high-throughput materials science.

Authors:  Wilhelm F Maier; Klaus Stöwe; Simone Sieg
Journal:  Angew Chem Int Ed Engl       Date:  2007       Impact factor: 15.336

5.  A small molecule primes embryonic stem cells for differentiation.

Authors:  Shoutian Zhu; Heiko Wurdak; Jian Wang; Costas A Lyssiotis; Eric C Peters; Charles Y Cho; Xu Wu; Peter G Schultz
Journal:  Cell Stem Cell       Date:  2009-05-08       Impact factor: 24.633

6.  Complex synthetic chemical libraries indexed with molecular tags.

Authors:  M H Ohlmeyer; R N Swanson; L W Dillard; J C Reader; G Asouline; R Kobayashi; M Wigler; W C Still
Journal:  Proc Natl Acad Sci U S A       Date:  1993-12-01       Impact factor: 11.205

7.  Adding L-3-(2-Naphthyl)alanine to the genetic code of E. coli.

Authors:  Lei Wang; Ansgar Brock; Peter G Schultz
Journal:  J Am Chem Soc       Date:  2002-03-06       Impact factor: 15.419

8.  Small molecule activators of sirtuins extend Saccharomyces cerevisiae lifespan.

Authors:  Konrad T Howitz; Kevin J Bitterman; Haim Y Cohen; Dudley W Lamming; Siva Lavu; Jason G Wood; Robert E Zipkin; Phuong Chung; Anne Kisielewski; Li-Li Zhang; Brandy Scherer; David A Sinclair
Journal:  Nature       Date:  2003-08-24       Impact factor: 49.962

9.  Enhanced D-amino acid incorporation into protein by modified ribosomes.

Authors:  Larisa M Dedkova; Nour Eddine Fahmi; Serguei Y Golovine; Sidney M Hecht
Journal:  J Am Chem Soc       Date:  2003-06-04       Impact factor: 15.419

10.  In vitro reprogramming of fibroblasts into a pluripotent ES-cell-like state.

Authors:  Marius Wernig; Alexander Meissner; Ruth Foreman; Tobias Brambrink; Manching Ku; Konrad Hochedlinger; Bradley E Bernstein; Rudolf Jaenisch
Journal:  Nature       Date:  2007-06-06       Impact factor: 49.962

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  27 in total

1.  NCAD, a database integrating the intrinsic conformational preferences of non-coded amino acids.

Authors:  Guillem Revilla-López; Juan Torras; David Curcó; Jordi Casanovas; M Isabel Calaza; David Zanuy; Ana I Jiménez; Carlos Cativiela; Ruth Nussinov; Piotr Grodzinski; Carlos Alemán
Journal:  J Phys Chem B       Date:  2010-06-03       Impact factor: 2.991

2.  A small molecule accelerates neuronal differentiation in the adult rat.

Authors:  Heiko Wurdak; Shoutian Zhu; Kyung Hoon Min; Lindsey Aimone; Luke L Lairson; James Watson; Gregory Chopiuk; James Demas; Bradley Charette; Rajkumar Halder; Eranthie Weerapana; Benjamin F Cravatt; Hollis T Cline; Eric C Peters; Jay Zhang; John R Walker; Chunlei Wu; Jonathan Chang; Tove Tuntland; Charles Y Cho; Peter G Schultz
Journal:  Proc Natl Acad Sci U S A       Date:  2010-09-07       Impact factor: 11.205

3.  Integrating the intrinsic conformational preferences of noncoded α-amino acids modified at the peptide bond into the noncoded amino acids database.

Authors:  Guillem Revilla-López; Francisco Rodríguez-Ropero; David Curcó; Juan Torras; M Isabel Calaza; David Zanuy; Ana I Jiménez; Carlos Cativiela; Ruth Nussinov; Carlos Alemán
Journal:  Proteins       Date:  2011-04-12

4.  Light-activated gene editing with a photocaged zinc-finger nuclease.

Authors:  Chungjung Chou; Alexander Deiters
Journal:  Angew Chem Int Ed Engl       Date:  2011-06-10       Impact factor: 15.336

5.  Efficient and Site-specific Antibody Labeling by Strain-promoted Azide-alkyne Cycloaddition.

Authors:  Sanggil Kim; Wooseok Ko; Hyunji Park; Hyun Soo Lee
Journal:  J Vis Exp       Date:  2016-12-23       Impact factor: 1.355

6.  Fluorescent Protein-Based Turn-On Probe through a General Protection-Deprotection Design Strategy.

Authors:  Xin Shang; Nanxi Wang; Ronald Cerny; Wei Niu; Jiantao Guo
Journal:  ACS Sens       Date:  2017-06-16       Impact factor: 7.711

7.  Total chemical synthesis, refolding, and crystallographic structure of fully active immunophilin calstabin 2 (FKBP12.6).

Authors:  Marine Bacchi; Magali Jullian; Serena Sirigu; Benjamin Fould; Tiphaine Huet; Lisa Bruyand; Mathias Antoine; Laurent Vuillard; Luisa Ronga; Leonard M G Chavas; Olivier Nosjean; Gilles Ferry; Karine Puget; Jean A Boutin
Journal:  Protein Sci       Date:  2016-10-13       Impact factor: 6.725

8.  A Switchable Site-Specific Antibody Conjugate.

Authors:  Zhigang Lyu; Lei Kang; Zakey Yusuf Buuh; Dawei Jiang; Jeffrey C McGuth; Juanjuan Du; Haley L Wissler; Weibo Cai; Rongsheng E Wang
Journal:  ACS Chem Biol       Date:  2018-02-28       Impact factor: 5.100

9.  Transforming a pair of orthogonal tRNA-aminoacyl-tRNA synthetase from Archaea to function in mammalian cells.

Authors:  Gabrielle Nina Thibodeaux; Xiang Liang; Kathryn Moncivais; Aiko Umeda; Oded Singer; Lital Alfonta; Zhiwen Jonathan Zhang
Journal:  PLoS One       Date:  2010-06-22       Impact factor: 3.240

10.  Towards vast libraries of scaffold-diverse, conformationally constrained oligomers.

Authors:  Thomas Kodadek; Patrick J McEnaney
Journal:  Chem Commun (Camb)       Date:  2016-03-21       Impact factor: 6.222

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