Literature DB >> 19288145

Linking conformation change to hemoglobin activation via chain-selective time-resolved resonance Raman spectroscopy of protoheme/mesoheme hybrids.

Gurusamy Balakrishnan1, Mohammed Ibrahim, Piotr J Mak, Jessica Hata, James R Kincaid, Thomas G Spiro.   

Abstract

Time-resolved resonance Raman (RR) spectra are reported for hemoglobin (Hb) tetramers, in which the alpha and beta chains are selectively substituted with mesoheme. The Soret absorption band shift in mesoheme relative to protoheme permits chain-selective recording of heme RR spectra. The evolution of these spectra following HbCO photolysis shows that the geminate recombination rates and the yields are the same for the two chains, consistent with recent results on (15)N-heme isotopomer hybrids. The spectra also reveal systematic shifts in the deoxyheme nu (4) and nu (Fe-His) RR bands, which are anticorrelated. These shifts are resolved for the successive intermediates in the protein structure, which have previously been determined from time-resolved UV RR spectra. Both chains show Fe-His bond compression in the immediate photoproduct, which relaxes during the formation of the first intermediate, R(deoxy) (0.07 micros), in which the proximal F-helix is proposed to move away from the heme. Subsequently, the Fe-His bond weakens, more so for the alpha chains than for the beta chains. The weakening is gradual for the beta chains, but is abrupt for the alpha chains, coinciding with completion of the R-T quaternary transition, at 20 micros. Since the transition from fast- to slow-rebinding Hb also occurs at 20 micros, the drop in the alpha chain nu (Fe-His) supports the localization of ligation restraint to tension in the Fe-His bond, at least in the alpha chains. The mechanism is more complex in the beta chains.

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Year:  2009        PMID: 19288145      PMCID: PMC2880192          DOI: 10.1007/s00775-009-0487-7

Source DB:  PubMed          Journal:  J Biol Inorg Chem        ISSN: 0949-8257            Impact factor:   3.358


  45 in total

1.  Confirmation of a unique intra-dimer cooperativity in the human hemoglobin alpha(1)beta(1)half-oxygenated intermediate supports the symmetry rule model of allosteric regulation.

Authors:  G K Ackers; J M Holt; Y Huang; Y Grinkova; A L Klinger; I Denisov
Journal:  Proteins       Date:  2000

2.  The crystal structure of a tetrameric hemoglobin in a partial hemichrome state.

Authors:  Antonio Riccio; Luigi Vitagliano; Guido di Prisco; Adriana Zagari; Lelio Mazzarella
Journal:  Proc Natl Acad Sci U S A       Date:  2002-07-01       Impact factor: 11.205

3.  ON THE NATURE OF ALLOSTERIC TRANSITIONS: A PLAUSIBLE MODEL.

Authors:  J MONOD; J WYMAN; J P CHANGEUX
Journal:  J Mol Biol       Date:  1965-05       Impact factor: 5.469

4.  Dynamics of allostery in hemoglobin: roles of the penultimate tyrosine H bonds.

Authors:  Janina Kneipp; Gurusamy Balakrishnan; Ruopian Chen; Tong-Jian Shen; Sarata C Sahu; Nancy T Ho; Janel L Giovannelli; Virgil Simplaceanu; Chien Ho; Thomas G Spiro
Journal:  J Mol Biol       Date:  2005-11-22       Impact factor: 5.469

Review 5.  Cooperativity and allostery in haemoglobin function.

Authors:  Chiara Ciaccio; Andrea Coletta; Giampiero De Sanctis; Stefano Marini; Massimo Coletta
Journal:  IUBMB Life       Date:  2008-02       Impact factor: 3.885

6.  Tracking the structural dynamics of proteins in solution using time-resolved wide-angle X-ray scattering.

Authors:  Marco Cammarata; Matteo Levantino; Friedrich Schotte; Philip A Anfinrud; Friederike Ewald; Jungkweon Choi; Antonio Cupane; Michael Wulff; Hyotcherl Ihee
Journal:  Nat Methods       Date:  2008-09-21       Impact factor: 28.547

7.  Resonance Raman study of deoxy and ligated (O2 and CO) mesoheme IX-reconstituted myoglobin, hemoglobin and its alpha and beta subunits.

Authors:  Edyta Podstawka; Leonard M Proniewicz
Journal:  J Inorg Biochem       Date:  2004-09       Impact factor: 4.155

8.  Time-resolved absorption and UV resonance Raman spectra reveal stepwise formation of T quaternary contacts in the allosteric pathway of hemoglobin.

Authors:  Gurusamy Balakrishnan; Martin A Case; Alex Pevsner; Xiaojie Zhao; Charbel Tengroth; George L McLendon; Thomas G Spiro
Journal:  J Mol Biol       Date:  2004-07-16       Impact factor: 5.469

9.  Hemoglobin site-mutants reveal dynamical role of interhelical H-bonds in the allosteric pathway: time-resolved UV resonance Raman evidence for intra-dimer coupling.

Authors:  Gurusamy Balakrishnan; Ching-Hsuan Tsai; Qiang Wu; Martin A Case; Alex Pevsner; George L McLendon; Chien Ho; Thomas G Spiro
Journal:  J Mol Biol       Date:  2004-07-16       Impact factor: 5.469

10.  Spectroscopic and crystallographic characterization of a tetrameric hemoglobin oxidation reveals structural features of the functional intermediate relaxed/tense state.

Authors:  Luigi Vitagliano; Alessandro Vergara; Giovanna Bonomi; Antonello Merlino; Cinzia Verde; Guido di Prisco; Barry D Howes; Giulietta Smulevich; Lelio Mazzarella
Journal:  J Am Chem Soc       Date:  2008-07-22       Impact factor: 15.419

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  5 in total

1.  Role of Heme Pocket Water in Allosteric Regulation of Ligand Reactivity in Human Hemoglobin.

Authors:  Raymond M Esquerra; Bushra M Bibi; Pooncharas Tipgunlakant; Ivan Birukou; Jayashree Soman; John S Olson; David S Kliger; Robert A Goldbeck
Journal:  Biochemistry       Date:  2016-07-13       Impact factor: 3.162

2.  Heme reactivity is uncoupled from quaternary structure in gel-encapsulated hemoglobin: a resonance Raman spectroscopic study.

Authors:  Eric M Jones; Gurusamy Balakrishnan; Thomas G Spiro
Journal:  J Am Chem Soc       Date:  2012-02-09       Impact factor: 15.419

3.  Quaternary structure controls ligand dynamics in soluble guanylate cyclase.

Authors:  Byung-Kuk Yoo; Isabelle Lamarre; Jean-Louis Martin; Michel Negrerie
Journal:  J Biol Chem       Date:  2012-01-04       Impact factor: 5.157

4.  Kinetic spectroscopy of heme hydration and ligand binding in myoglobin and isolated hemoglobin chains: an optical window into heme pocket water dynamics.

Authors:  Raymond M Esquerra; Ignacio López-Peña; Pooncharas Tipgunlakant; Ivan Birukou; Rosa L Nguyen; Jayashree Soman; John S Olson; David S Kliger; Robert A Goldbeck
Journal:  Phys Chem Chem Phys       Date:  2010-07-29       Impact factor: 3.676

5.  Differential control of heme reactivity in alpha and beta subunits of hemoglobin: a combined Raman spectroscopic and computational study.

Authors:  Eric M Jones; Emanuele Monza; Gurusamy Balakrishnan; George C Blouin; Piotr J Mak; Qianhong Zhu; James R Kincaid; Victor Guallar; Thomas G Spiro
Journal:  J Am Chem Soc       Date:  2014-07-14       Impact factor: 15.419

  5 in total

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