Literature DB >> 12093902

The crystal structure of a tetrameric hemoglobin in a partial hemichrome state.

Antonio Riccio1, Luigi Vitagliano, Guido di Prisco, Adriana Zagari, Lelio Mazzarella.   

Abstract

Tetrameric hemoglobins are the most widely used systems in studying protein cooperativity. Allosteric effects in hemoglobins arise from the switch between a relaxed (R) state and a tense (T) state occurring upon oxygen release. Here we report the 2.0-A crystal structure of the main hemoglobin component of the Antarctic fish Trematomus newnesi, in a partial hemichrome form. The two alpha-subunit iron atoms are bound to a CO molecule, whereas in the beta subunits the distal histidine residue is the sixth ligand of the heme iron. This structure, a tetrameric hemoglobin in the hemichrome state, demonstrates that the iron coordination by the distal histidine, usually associated with denaturing states, may be tolerated in a native-like hemoglobin structure. In addition, several features of the tertiary and quaternary organization of this structure are intermediate between the R and T states and agree well with the R --> T transition state properties obtained by spectroscopic and kinetic techniques. The analysis of this structure provides a detailed pathway of heme-heme communication and it indicates that the plasticity of the beta heme pocket plays a role in the R --> T transition of tetrameric hemoglobins.

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Year:  2002        PMID: 12093902      PMCID: PMC125021          DOI: 10.1073/pnas.132182099

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  35 in total

1.  Crystal structure of Trematomus newnesi haemoglobin re-opens the root effect question.

Authors:  L Mazzarella; R D'Avino; G di Prisco; C Savino; L Vitagliano; P C Moody; A Zagari
Journal:  J Mol Biol       Date:  1999-04-16       Impact factor: 5.469

Review 2.  Proton nuclear magnetic resonance studies on hemoglobin: cooperative interactions and partially ligated intermediates.

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Journal:  Adv Protein Chem       Date:  1992

3.  Kinetics of oxygen binding to hemoglobin A.

Authors:  Q H Gibson
Journal:  Biochemistry       Date:  1999-04-20       Impact factor: 3.162

4.  Hemoglobin allostery: resonance Raman spectroscopy of kinetic intermediates.

Authors:  V Jayaraman; K R Rodgers; I Mukerji; T G Spiro
Journal:  Science       Date:  1995-09-29       Impact factor: 47.728

5.  Tension in haemoglobin revealed by Fe-His(F8) bond rupture in the fully liganded T-state.

Authors:  M Paoli; G Dodson; R C Liddington; A J Wilkinson
Journal:  J Mol Biol       Date:  1997-08-15       Impact factor: 5.469

6.  Low-temperature formation of a distal histidine complex in hemoglobin: a probe for heme pocket flexibility.

Authors:  A Levy; J M Rifkind
Journal:  Biochemistry       Date:  1985-10-22       Impact factor: 3.162

7.  Allosteric transition intermediates modelled by crosslinked haemoglobins.

Authors:  M A Schumacher; M M Dixon; R Kluger; R T Jones; R G Brennan
Journal:  Nature       Date:  1995-05-04       Impact factor: 49.962

8.  The effects of E7 and E11 mutations on the kinetics of ligand binding to R state human hemoglobin.

Authors:  A J Mathews; R J Rohlfs; J S Olson; J Tame; J P Renaud; K Nagai
Journal:  J Biol Chem       Date:  1989-10-05       Impact factor: 5.157

9.  A third quaternary structure of human hemoglobin A at 1.7-A resolution.

Authors:  M M Silva; P H Rogers; A Arnone
Journal:  J Biol Chem       Date:  1992-08-25       Impact factor: 5.157

10.  Structure of deoxyhaemoglobin of the antarctic fish Pagothenia bernacchii with an analysis of the structural basis of the root effect by comparison of the liganded and unliganded haemoglobin structures.

Authors:  N Ito; N H Komiyama; G Fermi
Journal:  J Mol Biol       Date:  1995-07-28       Impact factor: 5.469

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  16 in total

1.  Structure and function of the Gondwanian hemoglobin of Pseudaphritis urvillii, a primitive notothenioid fish of temperate latitudes.

Authors:  Cinzia Verde; Barry D Howes; M Cristina De Rosa; Luca Raiola; Giulietta Smulevich; Richard Williams; Bruno Giardina; Elio Parisi; Guido Di Prisco
Journal:  Protein Sci       Date:  2004-08-31       Impact factor: 6.725

2.  Heme binding in gas-phase holo-myoglobin cations: distal becomes proximal?

Authors:  Atim A Enyenihi; Hongqian Yang; A Jimmy Ytterberg; Yaroslav Lyutvinskiy; Roman A Zubarev
Journal:  J Am Soc Mass Spectrom       Date:  2011-07-19       Impact factor: 3.109

3.  Crystallization, preliminary X-ray diffraction studies and Raman microscopy of the major haemoglobin from the sub-Antarctic fish Eleginops maclovinus in the carbomonoxy form.

Authors:  Antonello Merlino; Luigi Vitagliano; Anna Balsamo; Francesco P Nicoletti; Barry D Howes; Daniela Giordano; Daniela Coppola; Guido di Prisco; Cinzia Verde; Giulietta Smulevich; Lelio Mazzarella; Alessandro Vergara
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-10-29

4.  An order-disorder transition plays a role in switching off the root effect in fish hemoglobins.

Authors:  Alessandro Vergara; Luigi Vitagliano; Antonello Merlino; Filomena Sica; Katia Marino; Cinzia Verde; Guido di Prisco; Lelio Mazzarella
Journal:  J Biol Chem       Date:  2010-07-07       Impact factor: 5.157

5.  Effect of fatty acid interaction on myoglobin oxygen affinity and triglyceride metabolism.

Authors:  Thomas Jue; Gregory Simond; Traver J Wright; Lifan Shih; Youngran Chung; Renuka Sriram; Ulrike Kreutzer; Randall W Davis
Journal:  J Physiol Biochem       Date:  2017-03-29       Impact factor: 4.158

6.  Linking conformation change to hemoglobin activation via chain-selective time-resolved resonance Raman spectroscopy of protoheme/mesoheme hybrids.

Authors:  Gurusamy Balakrishnan; Mohammed Ibrahim; Piotr J Mak; Jessica Hata; James R Kincaid; Thomas G Spiro
Journal:  J Biol Inorg Chem       Date:  2009-03-14       Impact factor: 3.358

7.  A cis-proline in alpha-hemoglobin stabilizing protein directs the structural reorganization of alpha-hemoglobin.

Authors:  David A Gell; Liang Feng; Suiping Zhou; Philip D Jeffrey; Katerina Bendak; Andrew Gow; Mitchell J Weiss; Yigong Shi; Joel P Mackay
Journal:  J Biol Chem       Date:  2009-08-25       Impact factor: 5.157

8.  The structure of neuroglobin at high Xe and Kr pressure reveals partial conservation of globin internal cavities.

Authors:  Tommaso Moschetti; Uwe Mueller; Jörg Schulze; Maurizio Brunori; Beatrice Vallone
Journal:  Biophys J       Date:  2009-09-16       Impact factor: 4.033

9.  Correlation between hemichrome stability and the root effect in tetrameric hemoglobins.

Authors:  Alessandro Vergara; Marisa Franzese; Antonello Merlino; Giovanna Bonomi; Cinzia Verde; Daniela Giordano; Guido di Prisco; H Caroline Lee; Jack Peisach; Lelio Mazzarella
Journal:  Biophys J       Date:  2009-08-05       Impact factor: 4.033

10.  Structural characterization of ferric hemoglobins from three antarctic fish species of the suborder notothenioidei.

Authors:  Alessandro Vergara; Marisa Franzese; Antonello Merlino; Luigi Vitagliano; Cinzia Verde; Guido di Prisco; H Caroline Lee; Jack Peisach; Lelio Mazzarella
Journal:  Biophys J       Date:  2007-06-01       Impact factor: 4.033

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