Literature DB >> 16368110

Dynamics of allostery in hemoglobin: roles of the penultimate tyrosine H bonds.

Janina Kneipp1, Gurusamy Balakrishnan, Ruopian Chen, Tong-Jian Shen, Sarata C Sahu, Nancy T Ho, Janel L Giovannelli, Virgil Simplaceanu, Chien Ho, Thomas G Spiro.   

Abstract

The tyrosine residues adjacent to the C termini of the hemoglobin (Hb) subunits, alphaY140 and betaY145, are expected to play important structural roles, because the C termini are the loci of T-state quaternary salt-bridges, and because the tyrosine side-chains bridge the H and F helices via H bonds to the alphaV93 and betaV98 carbonyl groups. These roles have been investigated via measurements of oxygen binding, (1)H NMR spectra, resonance Raman (RR) spectra, and time-resolved resonance Raman (TR(3)) spectra on site mutants in which the Hcdots, three dots, centeredF H bonds are eliminated by replacing the tyrosine residues with phenylalanine. The TR(3) spectra confirm the hypothesis, based on TR(3) studies of wild-type Hb, that the Hcdots, three dots, centeredF H bonds break and then re-form during the sub-microsecond phase of the R-T quaternary transition. The TR(3) spectra support the inference from other mutational studies that the alphabeta dimers act as single dynamic units in this early phase, motions of the E and F helices being coupled tightly across the dimer interface. Formation of T quaternary contacts occurs at about the same rate in the mutants as in HbA. However, these contacts are weakened substantially by the Y/F substitutions. Equilibrium perturbations are apparent also, especially for the alpha-subunits, in which relaxation of the Fe-His bond, strengthening of the Acdots, three dots, centeredE interhelical H bond, and weakening of the "switch" quaternary contact in deoxyHb are all apparent. Structural effects are less marked for the beta-chain Y/F replacement, but the Bohr effect is reduced by 25%, indicating that the salt-bridge and H bond interactions of the adjacent C terminus are loosened. The alpha-chain replacement reduces the Bohr effect much more, consistent with the global perturbations detected by the structure probes.

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Year:  2005        PMID: 16368110     DOI: 10.1016/j.jmb.2005.11.006

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  9 in total

1.  Cooperative macromolecular device revealed by meta-analysis of static and time-resolved structures.

Authors:  Zhong Ren; Vukica Srajer; James E Knapp; William E Royer
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-14       Impact factor: 11.205

2.  Adventures in bioinorganic chemistry.

Authors:  Thomas G Spiro
Journal:  Inorg Chem       Date:  2007-11-14       Impact factor: 5.165

3.  Heme reactivity is uncoupled from quaternary structure in gel-encapsulated hemoglobin: a resonance Raman spectroscopic study.

Authors:  Eric M Jones; Gurusamy Balakrishnan; Thomas G Spiro
Journal:  J Am Chem Soc       Date:  2012-02-09       Impact factor: 15.419

4.  Elucidating Peptide and Protein Structure and Dynamics: UV Resonance Raman Spectroscopy.

Authors:  Sulayman A Oladepo; Kan Xiong; Zhenmin Hong; Sanford A Asher
Journal:  J Phys Chem Lett       Date:  2011-02-17       Impact factor: 6.475

Review 5.  New look at hemoglobin allostery.

Authors:  Yue Yuan; Ming F Tam; Virgil Simplaceanu; Chien Ho
Journal:  Chem Rev       Date:  2015-01-21       Impact factor: 60.622

6.  Linking conformation change to hemoglobin activation via chain-selective time-resolved resonance Raman spectroscopy of protoheme/mesoheme hybrids.

Authors:  Gurusamy Balakrishnan; Mohammed Ibrahim; Piotr J Mak; Jessica Hata; James R Kincaid; Thomas G Spiro
Journal:  J Biol Inorg Chem       Date:  2009-03-14       Impact factor: 3.358

Review 7.  Protein dynamics from time resolved UV Raman spectroscopy.

Authors:  Gurusamy Balakrishnan; Colin L Weeks; Mohammed Ibrahim; Alexandra V Soldatova; Thomas G Spiro
Journal:  Curr Opin Struct Biol       Date:  2008-07-19       Impact factor: 6.809

8.  Probiotic effect of Bacillus subtilis B-2998D, B-3057D, and Bacillus licheniformis B-2999D complex on sheep and lambs.

Authors:  Vladimir Devyatkin; Alexey Mishurov; Evgenia Kolodina
Journal:  J Adv Vet Anim Res       Date:  2021-03-08

9.  Differential control of heme reactivity in alpha and beta subunits of hemoglobin: a combined Raman spectroscopic and computational study.

Authors:  Eric M Jones; Emanuele Monza; Gurusamy Balakrishnan; George C Blouin; Piotr J Mak; Qianhong Zhu; James R Kincaid; Victor Guallar; Thomas G Spiro
Journal:  J Am Chem Soc       Date:  2014-07-14       Impact factor: 15.419

  9 in total

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