Literature DB >> 19274445

Methyl-detected 'out-and-back' NMR experiments for simultaneous assignments of Alabeta and Ilegamma2 methyl groups in large proteins.

Devon Sheppard1, Chenyun Guo, Vitali Tugarinov.   

Abstract

A set of sensitive methyl-detected 'out-and-back' NMR experiments for simultaneous assignments of Alabeta and Ilegamma2 methyl positions in large proteins is described. The developed methodology is applied to an 82-kDa enzyme Malate Synthase G. Complete alanine beta and isoleucine gamma2 1H-13C methyl chemical shift assignments could be obtained from the set of new methyl-detected 'out-and-back' 3D experiments. The described methodology for methyl assignments should be applicable to protein molecules within approximately 100-kDa molecular weight range irrespective of the labeling strategy chosen to produce selectively protonated Alabeta and Ilegamma2 13CH3 sites on a deuterated background.

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Year:  2009        PMID: 19274445     DOI: 10.1007/s10858-009-9305-3

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  25 in total

1.  An isotope labeling strategy for methyl TROSY spectroscopy.

Authors:  Vitali Tugarinov; Lewis E Kay
Journal:  J Biomol NMR       Date:  2004-02       Impact factor: 2.835

2.  Insufficiently dehydrated hydrogen bonds as determinants of protein interactions.

Authors:  Ariel Fernández; Harold A Scheraga
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-23       Impact factor: 11.205

Review 3.  Nuclear magnetic resonance spectroscopy of high-molecular-weight proteins.

Authors:  Vitali Tugarinov; Peter M Hwang; Lewis E Kay
Journal:  Annu Rev Biochem       Date:  2004       Impact factor: 23.643

4.  A general strategy for the assignment of aliphatic side-chain resonances of uniformly 13C,15N-labeled large proteins.

Authors:  Yingqi Xu; Zhi Lin; Chien Ho; Daiwen Yang
Journal:  J Am Chem Soc       Date:  2005-08-31       Impact factor: 15.419

5.  The contact interface of a 120 kD CheA-CheW complex by methyl TROSY interaction spectroscopy.

Authors:  Damon J Hamel; Frederick W Dahlquist
Journal:  J Am Chem Soc       Date:  2005-07-13       Impact factor: 15.419

6.  A new strategy for structure determination of large proteins in solution without deuteration.

Authors:  Yingqi Xu; Yu Zheng; Jing-Song Fan; Daiwen Yang
Journal:  Nat Methods       Date:  2006-11       Impact factor: 28.547

7.  Solution NMR of supramolecular complexes: providing new insights into function.

Authors:  Remco Sprangers; Algirdas Velyvis; Lewis E Kay
Journal:  Nat Methods       Date:  2007-09       Impact factor: 28.547

8.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

9.  Characterizing the use of perdeuteration in NMR studies of large proteins: 13C, 15N and 1H assignments of human carbonic anhydrase II.

Authors:  R A Venters; B T Farmer; C A Fierke; L D Spicer
Journal:  J Mol Biol       Date:  1996-12-20       Impact factor: 5.469

10.  4D 1H-13C NMR spectroscopy for assignments of alanine methyls in large and complex protein structures.

Authors:  Devon Sheppard; Chenyun Guo; Vitali Tugarinov
Journal:  J Am Chem Soc       Date:  2009-02-04       Impact factor: 15.419

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  10 in total

1.  Differential isotope-labeling for Leu and Val residues in a protein by E. coli cellular expression using stereo-specifically methyl labeled amino acids.

Authors:  Yohei Miyanoiri; Mitsuhiro Takeda; Kosuke Okuma; Akira M Ono; Tsutomu Terauchi; Masatsune Kainosho
Journal:  J Biomol NMR       Date:  2013-09-21       Impact factor: 2.835

Review 2.  NMR methods for structural studies of large monomeric and multimeric proteins.

Authors:  Dominique P Frueh; Andrew C Goodrich; Subrata H Mishra; Scott R Nichols
Journal:  Curr Opin Struct Biol       Date:  2013-07-11       Impact factor: 6.809

3.  Assignment of methyl NMR resonances of a 52 kDa protein with residue-specific 4D correlation maps.

Authors:  Subrata H Mishra; Dominique P Frueh
Journal:  J Biomol NMR       Date:  2015-05-08       Impact factor: 2.835

4.  Selective 1H- 13C NMR spectroscopy of methyl groups in residually protonated samples of large proteins.

Authors:  Chenyun Guo; Vitali Tugarinov
Journal:  J Biomol NMR       Date:  2009-12-03       Impact factor: 2.835

5.  Accurate measurements of the effects of deuteration at backbone amide positions on the chemical shifts of ¹⁵N, ¹³Cα, ¹³Cβ, ¹³CO and ¹Hα nuclei in proteins.

Authors:  Daoning Zhang; Vitali Tugarinov
Journal:  J Biomol NMR       Date:  2013-04-24       Impact factor: 2.835

6.  Enhanced biosynthetically directed fractional carbon-13 enrichment of proteins for backbone NMR assignments.

Authors:  Broc R Wenrich; Reilly E Sonstrom; Riju A Gupta; David Rovnyak
Journal:  Protein Expr Purif       Date:  2015-08-06       Impact factor: 1.650

7.  A Semiautomated Assignment Protocol for Methyl Group Side Chains in Large Proteins.

Authors:  Jonggul Kim; Yingjie Wang; Geoffrey Li; Gianluigi Veglia
Journal:  Methods Enzymol       Date:  2015-09-26       Impact factor: 1.600

8.  A NMR experiment for simultaneous correlations of valine and leucine/isoleucine methyls with carbonyl chemical shifts in proteins.

Authors:  Vitali Tugarinov; Vincenzo Venditti; G Marius Clore
Journal:  J Biomol NMR       Date:  2013-12-18       Impact factor: 2.835

Review 9.  Practical aspects of NMR signal assignment in larger and challenging proteins.

Authors:  Dominique P Frueh
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2013-12-15       Impact factor: 9.795

10.  Selective backbone labeling of proteins using 1,2-13C2-pyruvate as carbon source.

Authors:  Chenyun Guo; Chun Geng; Vitali Tugarinov
Journal:  J Biomol NMR       Date:  2009-05-26       Impact factor: 2.835

  10 in total

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