Literature DB >> 19957200

Selective 1H- 13C NMR spectroscopy of methyl groups in residually protonated samples of large proteins.

Chenyun Guo1, Vitali Tugarinov.   

Abstract

Methyl (13)CHD(2) isotopomers of all methyl-containing amino-acids can be observed in residually protonated samples of large proteins obtained from [U-(13)C,(1)H]-glucose/D(2)O-based bacterial media, with sensitivity sufficient for a number of NMR applications. Selective detection of some subsets of methyl groups (Ala(beta), Thr(gamma 2)) is possible using simple 'out-and-back' NMR methodology. Such selective methyl-detected 'out-and-back' NMR experiments allow complete assignments of threonine gamma 2 methyls in residually protonated, [U-(13)C,(1)H]-glucose/D(2)O-derived samples of an 82-kDa enzyme Malate Synthase G. [U-(13)C,(1)H]-glucose/D(2)O-derived protein samples are relatively inexpensive and are usually available at very early stages of any NMR study of high-molecular-weight systems.

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Year:  2009        PMID: 19957200     DOI: 10.1007/s10858-009-9393-0

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  24 in total

1.  Functional dynamics of human FKBP12 revealed by methyl 13C rotating frame relaxation dispersion NMR spectroscopy.

Authors:  Ulrika Brath; Mikael Akke; Daiwen Yang; Lewis E Kay; Frans A A Mulder
Journal:  J Am Chem Soc       Date:  2006-05-03       Impact factor: 15.419

2.  Four-dimensional NMR spectroscopy of a 723-residue protein: chemical shift assignments and secondary structure of malate synthase g.

Authors:  Vitali Tugarinov; Ranjith Muhandiram; Ayeda Ayed; Lewis E Kay
Journal:  J Am Chem Soc       Date:  2002-08-28       Impact factor: 15.419

3.  Solution NMR-derived global fold of a monomeric 82-kDa enzyme.

Authors:  Vitali Tugarinov; Wing-Yiu Choy; Vladislav Yu Orekhov; Lewis E Kay
Journal:  Proc Natl Acad Sci U S A       Date:  2005-01-06       Impact factor: 11.205

4.  Solution NMR of supramolecular complexes: providing new insights into function.

Authors:  Remco Sprangers; Algirdas Velyvis; Lewis E Kay
Journal:  Nat Methods       Date:  2007-09       Impact factor: 28.547

5.  Isotope labeling strategies for the study of high-molecular-weight proteins by solution NMR spectroscopy.

Authors:  Vitali Tugarinov; Voula Kanelis; Lewis E Kay
Journal:  Nat Protoc       Date:  2006       Impact factor: 13.491

6.  Comparison of 13CH3, 13CH2D, and 13CHD2 methyl labeling strategies in proteins.

Authors:  Jason E Ollerenshaw; Vitali Tugarinov; Nikolai R Skrynnikov; Lewis E Kay
Journal:  J Biomol NMR       Date:  2005-09       Impact factor: 2.835

7.  13C NMR study of C2- and C3-deuterated lactic acid production by parotid cells exposed to 13C-labeled glucose in the presence of D2O.

Authors:  W J Malaisse; M Biesemans; A Sener; R Willem
Journal:  Biochem Med Metab Biol       Date:  1994-10

8.  4D 1H-13C NMR spectroscopy for assignments of alanine methyls in large and complex protein structures.

Authors:  Devon Sheppard; Chenyun Guo; Vitali Tugarinov
Journal:  J Am Chem Soc       Date:  2009-02-04       Impact factor: 15.419

9.  Cross-correlated relaxation enhanced 1H[bond]13C NMR spectroscopy of methyl groups in very high molecular weight proteins and protein complexes.

Authors:  Vitali Tugarinov; Peter M Hwang; Jason E Ollerenshaw; Lewis E Kay
Journal:  J Am Chem Soc       Date:  2003-08-27       Impact factor: 15.419

10.  Generation of C3- and C2-deuterated L-lactic acid by human erythrocytes exposed to D-[1-13C]glucose, D-[2-13C]glucose and D-[6-13C]glucose in the presence of D2O.

Authors:  W J Malaisse; M Biesemans; R Willem
Journal:  Int J Biochem       Date:  1994-05
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  6 in total

1.  Selective editing of Val and Leu methyl groups in high molecular weight protein NMR.

Authors:  Weidong Hu; Andrew T Namanja; Steven Wong; Yuan Chen
Journal:  J Biomol NMR       Date:  2012-04-25       Impact factor: 2.835

2.  Differential isotope-labeling for Leu and Val residues in a protein by E. coli cellular expression using stereo-specifically methyl labeled amino acids.

Authors:  Yohei Miyanoiri; Mitsuhiro Takeda; Kosuke Okuma; Akira M Ono; Tsutomu Terauchi; Masatsune Kainosho
Journal:  J Biomol NMR       Date:  2013-09-21       Impact factor: 2.835

3.  Determination of ligand binding modes in weak protein-ligand complexes using sparse NMR data.

Authors:  Biswaranjan Mohanty; Martin L Williams; Bradley C Doak; Mansha Vazirani; Olga Ilyichova; Geqing Wang; Wolfgang Bermel; Jamie S Simpson; David K Chalmers; Glenn F King; Mehdi Mobli; Martin J Scanlon
Journal:  J Biomol NMR       Date:  2016-10-24       Impact factor: 2.835

4.  Assignment of methyl NMR resonances of a 52 kDa protein with residue-specific 4D correlation maps.

Authors:  Subrata H Mishra; Dominique P Frueh
Journal:  J Biomol NMR       Date:  2015-05-08       Impact factor: 2.835

Review 5.  Practical aspects of NMR signal assignment in larger and challenging proteins.

Authors:  Dominique P Frueh
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2013-12-15       Impact factor: 9.795

6.  Nearest-neighbor NMR spectroscopy: categorizing spectral peaks by their adjacent nuclei.

Authors:  Soumya P Behera; Abhinav Dubey; Wan-Na Chen; Viviane S De Paula; Meng Zhang; Nikolaos G Sgourakis; Wolfgang Bermel; Gerhard Wagner; Paul W Coote; Haribabu Arthanari
Journal:  Nat Commun       Date:  2020-11-03       Impact factor: 14.919

  6 in total

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