Literature DB >> 19132837

4D 1H-13C NMR spectroscopy for assignments of alanine methyls in large and complex protein structures.

Devon Sheppard1, Chenyun Guo, Vitali Tugarinov.   

Abstract

Alanine (13)CH(3) methyl groups can serve as a useful addition to the Ile, Leu, Val (ILV) selective isotope labeling methodology adopted for NMR studies of high-molecular-weight protein systems. A four-dimensional (4D) methyl-detected "out-and-back" NMR experiment has been developed that allowed us to obtain practically complete (1)H-(13)C assignments of more than 70 alanine methyl sites in a 723-residue enzyme Malate Synthase G. It can be anticipated that the developed NMR methodology will promote the use of alanine methyls as important probes of molecular structure and dynamics in large proteins.

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Year:  2009        PMID: 19132837     DOI: 10.1021/ja808202q

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  13 in total

1.  Selective editing of Val and Leu methyl groups in high molecular weight protein NMR.

Authors:  Weidong Hu; Andrew T Namanja; Steven Wong; Yuan Chen
Journal:  J Biomol NMR       Date:  2012-04-25       Impact factor: 2.835

2.  Structure-based prediction of methyl chemical shifts in proteins.

Authors:  Aleksandr B Sahakyan; Wim F Vranken; Andrea Cavalli; Michele Vendruscolo
Journal:  J Biomol NMR       Date:  2011-07-12       Impact factor: 2.835

3.  Differential isotope-labeling for Leu and Val residues in a protein by E. coli cellular expression using stereo-specifically methyl labeled amino acids.

Authors:  Yohei Miyanoiri; Mitsuhiro Takeda; Kosuke Okuma; Akira M Ono; Tsutomu Terauchi; Masatsune Kainosho
Journal:  J Biomol NMR       Date:  2013-09-21       Impact factor: 2.835

4.  Sparse multidimensional iterative lineshape-enhanced (SMILE) reconstruction of both non-uniformly sampled and conventional NMR data.

Authors:  Jinfa Ying; Frank Delaglio; Dennis A Torchia; Ad Bax
Journal:  J Biomol NMR       Date:  2016-11-19       Impact factor: 2.835

5.  Selective 1H- 13C NMR spectroscopy of methyl groups in residually protonated samples of large proteins.

Authors:  Chenyun Guo; Vitali Tugarinov
Journal:  J Biomol NMR       Date:  2009-12-03       Impact factor: 2.835

6.  Accurate measurements of the effects of deuteration at backbone amide positions on the chemical shifts of ¹⁵N, ¹³Cα, ¹³Cβ, ¹³CO and ¹Hα nuclei in proteins.

Authors:  Daoning Zhang; Vitali Tugarinov
Journal:  J Biomol NMR       Date:  2013-04-24       Impact factor: 2.835

7.  Enhanced biosynthetically directed fractional carbon-13 enrichment of proteins for backbone NMR assignments.

Authors:  Broc R Wenrich; Reilly E Sonstrom; Riju A Gupta; David Rovnyak
Journal:  Protein Expr Purif       Date:  2015-08-06       Impact factor: 1.650

8.  Methyl-detected 'out-and-back' NMR experiments for simultaneous assignments of Alabeta and Ilegamma2 methyl groups in large proteins.

Authors:  Devon Sheppard; Chenyun Guo; Vitali Tugarinov
Journal:  J Biomol NMR       Date:  2009-03-10       Impact factor: 2.835

9.  A NMR experiment for simultaneous correlations of valine and leucine/isoleucine methyls with carbonyl chemical shifts in proteins.

Authors:  Vitali Tugarinov; Vincenzo Venditti; G Marius Clore
Journal:  J Biomol NMR       Date:  2013-12-18       Impact factor: 2.835

Review 10.  Practical aspects of NMR signal assignment in larger and challenging proteins.

Authors:  Dominique P Frueh
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2013-12-15       Impact factor: 9.795

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