Literature DB >> 23850141

NMR methods for structural studies of large monomeric and multimeric proteins.

Dominique P Frueh1, Andrew C Goodrich, Subrata H Mishra, Scott R Nichols.   

Abstract

NMR structural studies of large monomeric and multimeric proteins face distinct challenges. In large monomeric proteins, the common occurrence of frequency degeneracies between residues impedes unambiguous assignment of NMR signals. To overcome this barrier, nonuniform sampling (NUS) is used to measure spectra with optimal resolution within reasonable time, new correlation maps resolve previous impasses in assignment strategies, and novel selective methyl labeling schemes provide additional structural probes without cluttering NMR spectra. These advances push the limits of NMR studies of large monomeric proteins. Large multimeric and multidomain proteins are studied by NMR when individual components can also be studied by NMR and have known structures. The structural properties of large assemblies are obtained by identifying binding surfaces, by orienting domains, and employing limited distance constraints. Segmental labeling and the combination of NMR with other methods have helped popularize NMR studies of such systems.
Copyright © 2013 Elsevier Ltd. All rights reserved.

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Year:  2013        PMID: 23850141      PMCID: PMC3805735          DOI: 10.1016/j.sbi.2013.06.016

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  57 in total

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Authors:  Erik R P Zuiderweg
Journal:  Biochemistry       Date:  2002-01-08       Impact factor: 3.162

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4.  Accelerated acquisition of high resolution triple-resonance spectra using non-uniform sampling and maximum entropy reconstruction.

Authors:  David Rovnyak; Dominique P Frueh; Mallika Sastry; Zhen-Yu J Sun; Alan S Stern; Jeffrey C Hoch; Gerhard Wagner
Journal:  J Magn Reson       Date:  2004-09       Impact factor: 2.229

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Authors:  Amy M Ruschak; Tomasz L Religa; Sarah Breuer; Susanne Witt; Lewis E Kay
Journal:  Nature       Date:  2010-10-14       Impact factor: 49.962

6.  Synthesis of a 13C-methyl-group-labeled methionine precursor as a useful tool for simplifying protein structural analysis by NMR spectroscopy.

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8.  Exploring signal-to-noise ratio and sensitivity in non-uniformly sampled multi-dimensional NMR spectra.

Authors:  Sven G Hyberts; Scott A Robson; Gerhard Wagner
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9.  Measurement and interpretation of 15N-1H residual dipolar couplings in larger proteins.

Authors:  Akash Bhattacharya; Matthew Revington; Erik R P Zuiderweg
Journal:  J Magn Reson       Date:  2009-11-26       Impact factor: 2.229

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Authors:  Algirdas Velyvis; Amy M Ruschak; Lewis E Kay
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  27 in total

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2.  Using NMR Chemical Shifts and Cryo-EM Density Restraints in Iterative Rosetta-MD Protein Structure Refinement.

Authors:  Sumudu P Leelananda; Steffen Lindert
Journal:  J Chem Inf Model       Date:  2019-12-24       Impact factor: 4.956

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Journal:  Proteins       Date:  2019-08-08

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5.  Modulation of Structural Heterogeneity Controls Phytochrome Photoswitching.

Authors:  Emil Gustavsson; Linnéa Isaksson; Cecilia Persson; Maxim Mayzel; Ulrika Brath; Lidija Vrhovac; Janne A Ihalainen; B Göran Karlsson; Vladislav Orekhov; Sebastian Westenhoff
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6.  UTOPIA NMR: activating unexploited magnetization using interleaved low-gamma detection.

Authors:  Aldino Viegas; Thibault Viennet; Tsyr-Yan Yu; Frank Schumann; Wolfgang Bermel; Gerhard Wagner; Manuel Etzkorn
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7.  Chasing Tails: Cathepsin-L Improves Structural Analysis of Histones by HX-MS.

Authors:  Malvina Papanastasiou; James Mullahoo; Katherine C DeRuff; Besnik Bajrami; Ioannis Karageorgos; Stephen E Johnston; Ryan Peckner; Samuel A Myers; Steven A Carr; Jacob D Jaffe
Journal:  Mol Cell Proteomics       Date:  2019-08-13       Impact factor: 5.911

8.  Non-Uniform Sampling and J-UNIO Automation for Efficient Protein NMR Structure Determination.

Authors:  Tatiana Didenko; Andrew Proudfoot; Samit Kumar Dutta; Pedro Serrano; Kurt Wüthrich
Journal:  Chemistry       Date:  2015-07-28       Impact factor: 5.236

9.  Controls of nature: Secondary, tertiary, and quaternary structure of the enamel protein amelogenin in solution and on hydroxyapatite.

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10.  Interaction study between HCV NS5A-D2 and NS5B using 19F NMR.

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