Literature DB >> 19210734

Group testing regression models with fixed and random effects.

Peng Chen1, Joshua M Tebbs, Christopher R Bilder.   

Abstract

Group testing, where subjects are tested in pools rather than individually, has a long history of successful application in infectious disease screening. In this article, we develop group testing regression models to include covariate effects that are best regarded as random. We present approaches to fit mixed effects models using maximum likelihood, investigate likelihood ratio and score tests for variance components, and evaluate small sample performance using simulation. We illustrate our methods using chlamydia and gonorrhea data collected by the state of Nebraska as part of the Infertility Prevention Project.

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Year:  2009        PMID: 19210734      PMCID: PMC2794992          DOI: 10.1111/j.1541-0420.2008.01183.x

Source DB:  PubMed          Journal:  Biometrics        ISSN: 0006-341X            Impact factor:   2.571


  12 in total

1.  Regression models for disease prevalence with diagnostic tests on pools of serum samples.

Authors:  S Vansteelandt; E Goetghebeur; T Verstraeten
Journal:  Biometrics       Date:  2000-12       Impact factor: 2.571

2.  Utility of pooled urine specimens for detection of Chlamydia trachomatis and Neisseria gonorrhoeae in men attending public sexually transmitted infection clinics in Mumbai, India, by PCR.

Authors:  Christina Lindan; Meenakshi Mathur; Sameer Kumta; Hermangi Jerajani; Alka Gogate; Julius Schachter; Jeanne Moncada
Journal:  J Clin Microbiol       Date:  2005-04       Impact factor: 5.948

3.  Comparison of group testing algorithms for case identification in the presence of test error.

Authors:  Hae-Young Kim; Michael G Hudgens; Jonathan M Dreyfuss; Daniel J Westreich; Christopher D Pilcher
Journal:  Biometrics       Date:  2007-05-14       Impact factor: 2.571

4.  Pooling urine samples for ligase chain reaction screening for genital Chlamydia trachomatis infection in asymptomatic women.

Authors:  K A Kacena; S B Quinn; M R Howell; G E Madico; T C Quinn; C A Gaydos
Journal:  J Clin Microbiol       Date:  1998-02       Impact factor: 5.948

5.  Use of pooled urine samples and automated DNA isolation to achieve improved sensitivity and cost-effectiveness of large-scale testing for Chlamydia trachomatis in pregnant women.

Authors:  G I J G Rours; R P Verkooyen; H F M Willemse; E A E van der Zwaan; A van Belkum; R de Groot; H A Verbrugh; J M Ossewaarde
Journal:  J Clin Microbiol       Date:  2005-09       Impact factor: 5.948

6.  Analysis of multistage pooling studies of biological specimens for estimating disease incidence and prevalence.

Authors:  R Brookmeyer
Journal:  Biometrics       Date:  1999-06       Impact factor: 2.571

7.  Detection of acute infections during HIV testing in North Carolina.

Authors:  Christopher D Pilcher; Susan A Fiscus; Trang Q Nguyen; Evelyn Foust; Leslie Wolf; Del Williams; Rhonda Ashby; Judy Owen O'Dowd; J Todd McPherson; Brandt Stalzer; Lisa Hightow; William C Miller; Joseph J Eron; Myron S Cohen; Peter A Leone
Journal:  N Engl J Med       Date:  2005-05-05       Impact factor: 91.245

8.  Mini-pool screening by nucleic acid testing for hepatitis B virus, hepatitis C virus, and HIV: preliminary results.

Authors:  M S Cardoso; K Koerner; B Kubanek
Journal:  Transfusion       Date:  1998-10       Impact factor: 3.157

9.  Bias, efficiency, and agreement for group-testing regression models.

Authors:  Christopher R Bilder; Joshua M Tebbs
Journal:  J Stat Comput Simul       Date:  2009-01-01       Impact factor: 1.424

10.  Pooling of urine samples for screening for Neisseria gonorrhoeae by ligase chain reaction: accuracy and application.

Authors:  K A Kacena; S B Quinn; S C Hartman; T C Quinn; C A Gaydos
Journal:  J Clin Microbiol       Date:  1998-12       Impact factor: 5.948

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  21 in total

1.  Bayesian regression for group testing data.

Authors:  Christopher S McMahan; Joshua M Tebbs; Timothy E Hanson; Christopher R Bilder
Journal:  Biometrics       Date:  2017-04-12       Impact factor: 2.571

2.  Regression models for group testing data with pool dilution effects.

Authors:  Christopher S McMahan; Joshua M Tebbs; Christopher R Bilder
Journal:  Biostatistics       Date:  2012-11-28       Impact factor: 5.899

3.  Pooling designs for outcomes under a Gaussian random effects model.

Authors:  Yaakov Malinovsky; Paul S Albert; Enrique F Schisterman
Journal:  Biometrics       Date:  2011-10-09       Impact factor: 2.571

4.  A general framework for the regression analysis of pooled biomarker assessments.

Authors:  Yan Liu; Christopher McMahan; Colin Gallagher
Journal:  Stat Med       Date:  2017-03-28       Impact factor: 2.373

5.  Regression analysis and variable selection for two-stage multiple-infection group testing data.

Authors:  Juexin Lin; Dewei Wang; Qi Zheng
Journal:  Stat Med       Date:  2019-07-11       Impact factor: 2.373

6.  Misclassified group-tested current status data.

Authors:  L C Petito; N P Jewell
Journal:  Biometrika       Date:  2016-12-08       Impact factor: 2.445

7.  Group testing regression models with dilution submodels.

Authors:  Md S Warasi; Christopher S McMahan; Joshua M Tebbs; Christopher R Bilder
Journal:  Stat Med       Date:  2017-08-30       Impact factor: 2.373

8.  Global goodness-of-fit tests for group testing regression models.

Authors:  Peng Chen; Joshua M Tebbs; Christopher R Bilder
Journal:  Stat Med       Date:  2009-10-15       Impact factor: 2.373

9.  Regression analysis for multiple-disease group testing data.

Authors:  Boan Zhang; Christopher R Bilder; Joshua M Tebbs
Journal:  Stat Med       Date:  2013-05-23       Impact factor: 2.373

10.  Estimating the prevalence of multiple diseases from two-stage hierarchical pooling.

Authors:  Md S Warasi; Joshua M Tebbs; Christopher S McMahan; Christopher R Bilder
Journal:  Stat Med       Date:  2016-04-18       Impact factor: 2.373

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