Literature DB >> 19190186

Determining the scale of the Bicoid morphogen gradient.

Inbal Hecht1, Wouter-Jan Rappel, Herbert Levine.   

Abstract

Bicoid is a morphogen that sets up the anterior-posterior axis in early Drosophila embryos. Although the form of the Bicoid profile is consistent with a simple diffusion/degradation model, the observed length scale is much larger than should be expected based on the measured diffusion rate. Here, we study two possible mechanisms that could, in principle, affect this gradient and, hence, address this disagreement. First, we show that including trapping and release of Bicoid by the nuclei during cleavage cycles does not alter the morphogen length scale. More crucially, the inclusion of advective transport due to cytoplasmic streaming can have a large effect. Specifically, we build a simple model based on the (limited) experimental data and show that such a flow can lead to a Bicoid profile that is consistent with various experimental features. Specifically, the observed length scale is obtained, a steady profile is established, and improved scaling between embryos of different lengths is demonstrated.

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Year:  2009        PMID: 19190186      PMCID: PMC2644102          DOI: 10.1073/pnas.0807655106

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  28 in total

Review 1.  Morphogen gradient interpretation.

Authors:  J B Gurdon; P Y Bourillot
Journal:  Nature       Date:  2001-10-25       Impact factor: 49.962

2.  Dynamic control of positional information in the early Drosophila embryo.

Authors:  Johannes Jaeger; Svetlana Surkova; Maxim Blagov; Hilde Janssens; David Kosman; Konstantin N Kozlov; Ekaterina Myasnikova; Carlos E Vanario-Alonso; Maria Samsonova; David H Sharp; John Reinitz
Journal:  Nature       Date:  2004-07-15       Impact factor: 49.962

3.  A database for management of gene expression data in situ.

Authors:  Ekaterina Poustelnikova; Andrei Pisarev; Maxim Blagov; Maria Samsonova; John Reinitz
Journal:  Bioinformatics       Date:  2004-04-01       Impact factor: 6.937

4.  A gradient of bicoid protein in Drosophila embryos.

Authors:  W Driever; C Nüsslein-Volhard
Journal:  Cell       Date:  1988-07-01       Impact factor: 41.582

5.  The bicoid protein determines position in the Drosophila embryo in a concentration-dependent manner.

Authors:  W Driever; C Nüsslein-Volhard
Journal:  Cell       Date:  1988-07-01       Impact factor: 41.582

6.  Pre-steady-state decoding of the Bicoid morphogen gradient.

Authors:  Sven Bergmann; Oded Sandler; Hila Sberro; Sara Shnider; Eyal Schejter; Ben-Zion Shilo; Naama Barkai
Journal:  PLoS Biol       Date:  2007-02       Impact factor: 8.029

7.  Dynamic changes in microtubule configuration correlate with nuclear migration in the preblastoderm Drosophila embryo.

Authors:  J Baker; W E Theurkauf; G Schubiger
Journal:  J Cell Biol       Date:  1993-07       Impact factor: 10.539

8.  Retarded nuclear migration in Drosophila embryos with aberrant F-actin reorganization caused by maternal mutations and by cytochalasin treatment.

Authors:  K Hatanaka; M Okada
Journal:  Development       Date:  1991-04       Impact factor: 6.868

9.  How an actin network might cause fountain streaming and nuclear migration in the syncytial Drosophila embryo.

Authors:  G von Dassow; G Schubiger
Journal:  J Cell Biol       Date:  1994-12       Impact factor: 10.539

10.  Cortical recruitment of nonmuscle myosin II in early syncytial Drosophila embryos: its role in nuclear axial expansion and its regulation by Cdc2 activity.

Authors:  Anne Royou; William Sullivan; Roger Karess
Journal:  J Cell Biol       Date:  2002-07-08       Impact factor: 10.539

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  27 in total

1.  Shaping a morphogen gradient for positional precision.

Authors:  Feng He; Timothy E Saunders; Ying Wen; David Cheung; Renjie Jiao; Pieter Rein ten Wolde; Martin Howard; Jun Ma
Journal:  Biophys J       Date:  2010-08-04       Impact factor: 4.033

2.  Multiscale modeling of diffusion in the early Drosophila embryo.

Authors:  Christine Sample; Stanislav Y Shvartsman
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-17       Impact factor: 11.205

Review 3.  Modelling the Bicoid gradient.

Authors:  Oliver Grimm; Mathieu Coppey; Eric Wieschaus
Journal:  Development       Date:  2010-07       Impact factor: 6.868

Review 4.  Mechanisms of scaling in pattern formation.

Authors:  David M Umulis; Hans G Othmer
Journal:  Development       Date:  2013-12       Impact factor: 6.868

5.  Morphogen gradient formation and action: insights from studying Bicoid protein degradation.

Authors:  Junbo Liu; Feng He; Jun Ma
Journal:  Fly (Austin)       Date:  2011-07-01       Impact factor: 2.160

6.  Oscillatory fluid flow drives scaling of contraction wave with system size.

Authors:  Jean-Daniel Julien; Karen Alim
Journal:  Proc Natl Acad Sci U S A       Date:  2018-10-03       Impact factor: 11.205

7.  Quantifying the Bicoid morphogen gradient in living fly embryos.

Authors:  Alexander H Morrison; Martin Scheeler; Julien Dubuis; Thomas Gregor
Journal:  Cold Spring Harb Protoc       Date:  2012-04-01

Review 8.  Microfluidic analysis of oocyte and embryo biomechanical properties to improve outcomes in assisted reproductive technologies.

Authors:  Livia Z Yanez; David B Camarillo
Journal:  Mol Hum Reprod       Date:  2017-04-01       Impact factor: 4.025

9.  A two-dimensional simulation model of the bicoid gradient in Drosophila.

Authors:  Jingyuan Deng; Wei Wang; Long Jason Lu; Jun Ma
Journal:  PLoS One       Date:  2010-04-21       Impact factor: 3.240

10.  Stable, precise, and reproducible patterning of bicoid and hunchback molecules in the early Drosophila embryo.

Authors:  Yurie Okabe-Oho; Hiroki Murakami; Suguru Oho; Masaki Sasai
Journal:  PLoS Comput Biol       Date:  2009-08-28       Impact factor: 4.475

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