Literature DB >> 24301464

Mechanisms of scaling in pattern formation.

David M Umulis1, Hans G Othmer.   

Abstract

Many organisms and their constituent tissues and organs vary substantially in size but differ little in morphology; they appear to be scaled versions of a common template or pattern. Such scaling involves adjusting the intrinsic scale of spatial patterns of gene expression that are set up during development to the size of the system. Identifying the mechanisms that regulate scaling of patterns at the tissue, organ and organism level during development is a longstanding challenge in biology, but recent molecular-level data and mathematical modeling have shed light on scaling mechanisms in several systems, including Drosophila and Xenopus. Here, we investigate the underlying principles needed for understanding the mechanisms that can produce scale invariance in spatial pattern formation and discuss examples of systems that scale during development.

Entities:  

Keywords:  Bone morphogenetic proteins; Mathematical modeling; Morphogen; Pattern formation; Scale invariance; Turing

Mesh:

Substances:

Year:  2013        PMID: 24301464      PMCID: PMC3848184          DOI: 10.1242/dev.100511

Source DB:  PubMed          Journal:  Development        ISSN: 0950-1991            Impact factor:   6.868


  72 in total

1.  Network motifs: simple building blocks of complex networks.

Authors:  R Milo; S Shen-Orr; S Itzkovitz; N Kashtan; D Chklovskii; U Alon
Journal:  Science       Date:  2002-10-25       Impact factor: 47.728

Review 2.  Size and shape: the developmental regulation of static allometry in insects.

Authors:  Alexander W Shingleton; W Anthony Frankino; Thomas Flatt; H Frederik Nijhout; Douglas J Emlen
Journal:  Bioessays       Date:  2007-06       Impact factor: 4.345

3.  Analysis of dynamic morphogen scale invariance.

Authors:  David M Umulis
Journal:  J R Soc Interface       Date:  2009-03-11       Impact factor: 4.118

4.  Dorsoventral patterning in Xenopus: inhibition of ventral signals by direct binding of chordin to BMP-4.

Authors:  S Piccolo; Y Sasai; B Lu; E M De Robertis
Journal:  Cell       Date:  1996-08-23       Impact factor: 41.582

5.  Organism-scale modeling of early Drosophila patterning via bone morphogenetic proteins.

Authors:  David M Umulis; Osamu Shimmi; Michael B O'Connor; Hans G Othmer
Journal:  Dev Cell       Date:  2010-02-16       Impact factor: 12.270

6.  A reaction-diffusion wave on the skin of the marine angelfish Pomacanthus.

Authors:  S Kondo; R Asal
Journal:  Nature       Date:  1995-08-31       Impact factor: 49.962

7.  Canalization of segmentation and its evolution in Drosophila.

Authors:  Susan E Lott; Martin Kreitman; Arnar Palsson; Elena Alekseeva; Michael Z Ludwig
Journal:  Proc Natl Acad Sci U S A       Date:  2007-06-14       Impact factor: 11.205

8.  Shape and function of the Bicoid morphogen gradient in dipteran species with different sized embryos.

Authors:  Thomas Gregor; Alistair P McGregor; Eric F Wieschaus
Journal:  Dev Biol       Date:  2008-02-13       Impact factor: 3.582

9.  The formation of the Bicoid morphogen gradient requires protein movement from anteriorly localized mRNA.

Authors:  Shawn C Little; Gašper Tkačik; Thomas B Kneeland; Eric F Wieschaus; Thomas Gregor
Journal:  PLoS Biol       Date:  2011-03-01       Impact factor: 8.029

10.  Evolution acts on enhancer organization to fine-tune gradient threshold readouts.

Authors:  Justin Crocker; Yoichiro Tamori; Albert Erives
Journal:  PLoS Biol       Date:  2008-11-04       Impact factor: 8.029

View more
  36 in total

1.  Critical waves and the length problem of biology.

Authors:  Robert B Laughlin
Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-03       Impact factor: 11.205

Review 2.  Communication codes in developmental signaling pathways.

Authors:  Pulin Li; Michael B Elowitz
Journal:  Development       Date:  2019-06-27       Impact factor: 6.868

3.  Microfluidics on the fly: Inexpensive rapid fabrication of thermally laminated microfluidic devices for live imaging and multimodal perturbations of multicellular systems.

Authors:  Megan Levis; Nilay Kumar; Emily Apakian; Cesar Moreno; Ulises Hernandez; Ana Olivares; Fernando Ontiveros; Jeremiah J Zartman
Journal:  Biomicrofluidics       Date:  2019-04-26       Impact factor: 2.800

Review 4.  Embryoids, organoids and gastruloids: new approaches to understanding embryogenesis.

Authors:  Mijo Simunovic; Ali H Brivanlou
Journal:  Development       Date:  2017-03-15       Impact factor: 6.868

Review 5.  Integrating cellular dimensions with cell differentiation during early development.

Authors:  Hui Chen; Wenchao Qian; Matthew C Good
Journal:  Curr Opin Cell Biol       Date:  2020-11-02       Impact factor: 8.382

6.  Integrated K+ channel and K+Cl- cotransporter functions are required for the coordination of size and proportion during development.

Authors:  Jennifer S Lanni; David Peal; Laura Ekstrom; Haining Chen; Caroline Stanclift; Margot E Bowen; Adriana Mercado; Gerardo Gamba; Kristopher T Kahle; Matthew P Harris
Journal:  Dev Biol       Date:  2019-08-28       Impact factor: 3.582

Review 7.  Scale invariance in natural and artificial collective systems: a review.

Authors:  Yara Khaluf; Eliseo Ferrante; Pieter Simoens; Cristián Huepe
Journal:  J R Soc Interface       Date:  2017-11       Impact factor: 4.118

8.  Size-reduced embryos reveal a gradient scaling-based mechanism for zebrafish somite formation.

Authors:  Kana Ishimatsu; Tom W Hiscock; Zach M Collins; Dini Wahyu Kartika Sari; Kenny Lischer; David L Richmond; Yasumasa Bessho; Takaaki Matsui; Sean G Megason
Journal:  Development       Date:  2018-06-11       Impact factor: 6.868

9.  Scaling a Dpp Morphogen Gradient through Feedback Control of Receptors and Co-receptors.

Authors:  Yilun Zhu; Yuchi Qiu; Weitao Chen; Qing Nie; Arthur D Lander
Journal:  Dev Cell       Date:  2020-06-22       Impact factor: 12.270

10.  Stochastic analysis of reaction-diffusion processes.

Authors:  Jifeng Hu; Hye-Won Kang; Hans G Othmer
Journal:  Bull Math Biol       Date:  2013-05-30       Impact factor: 1.758

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.