Literature DB >> 18084085

An unexpected outcome of surface engineering an integral membrane protein: improved crystallization of cytochrome ba(3) from Thermus thermophilus.

Bin Liu1, V Mitch Luna, Ying Chen, C David Stout, James A Fee.   

Abstract

Past work has shown that it is feasible to mutate surface residues of soluble proteins and to a lesser extent membrane proteins in order to improve their crystallization behavior. Described here is a successful application of this approach to the integral membrane protein Thermus thermophilus cytochrome ba(3) oxidase. Two mutant forms of this enzyme (I-K258R and I-K258R/II-E4Q) were created in which symmetrical crystal contacts within crystals of wild-type enzyme were modified. These mutant proteins had greatly shortened crystallization times, decreasing from approximately 30 d for the wild type to 1-3 d for the mutants, and crystallization was highly reproducible. Native-like proteins crystallize in space group P4(3)2(1)2, whereas the mutant proteins crystallize in space group P4(1)2(1)2 with a different packing arrangement. Crystals of the P4(3)2(1)2 form occasionally diffracted to 2.4-2.3 A resolution following controlled dehydration, while those of the P4(1)2(1)2 form routinely diffracted to between 3.0 and 2.6 A for crystals that had been cryoprotected but not dehydrated.

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Year:  2007        PMID: 18084085      PMCID: PMC2344090          DOI: 10.1107/S1744309107054176

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  32 in total

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4.  A designed mutant of the enzyme glutathione reductase shortens the crystallization time by a factor of forty.

Authors:  P R Mittl; A Berry; N S Scrutton; R N Perham; G E Schultz
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5.  Generation, characterization and crystallization of a highly active and stable cytochrome bc1 complex mutant from Rhodobacter sphaeroides.

Authors:  Maria Elberry; Kunhung Xiao; Lothar Esser; Di Xia; Linda Yu; Chang-An Yu
Journal:  Biochim Biophys Acta       Date:  2006-05-27

6.  Solving the structure of human H ferritin by genetically engineering intermolecular crystal contacts.

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Journal:  Nature       Date:  1991-02-07       Impact factor: 49.962

7.  Identification of conserved lipid/detergent-binding sites in a high-resolution structure of the membrane protein cytochrome c oxidase.

Authors:  Ling Qin; Carrie Hiser; Anne Mulichak; R Michael Garavito; Shelagh Ferguson-Miller
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8.  Fv fragment-mediated crystallization of the membrane protein bacterial cytochrome c oxidase.

Authors:  C Ostermeier; S Iwata; B Ludwig; H Michel
Journal:  Nat Struct Biol       Date:  1995-10

9.  The impact of Glu-->Ala and Glu-->Asp mutations on the crystallization properties of RhoGDI: the structure of RhoGDI at 1.3 A resolution.

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Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-11-23

10.  The whole structure of the 13-subunit oxidized cytochrome c oxidase at 2.8 A.

Authors:  T Tsukihara; H Aoyama; E Yamashita; T Tomizaki; H Yamaguchi; K Shinzawa-Itoh; R Nakashima; R Yaono; S Yoshikawa
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  6 in total

1.  Application of protein engineering to enhance crystallizability and improve crystal properties.

Authors:  Zygmunt S Derewenda
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-04-21

2.  Improvement of crystal quality by surface mutations of beta-lactamase Toho-1.

Authors:  Tatsuro Shimamura; Yasushi Nitanai; Takuro Uchiyama; Hiroshi Matsuzawa
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-03-25

3.  Structural changes that occur upon photolysis of the Fe(II)(a3)-CO complex in the cytochrome ba(3)-oxidase of Thermus thermophilus: a combined X-ray crystallographic and infrared spectral study demonstrates CO binding to Cu(B).

Authors:  Bin Liu; Yang Zhang; J Timothy Sage; S Michael Soltis; Tzanko Doukov; Ying Chen; C David Stout; James A Fee
Journal:  Biochim Biophys Acta       Date:  2011-12-27

4.  Combined microspectrophotometric and crystallographic examination of chemically reduced and X-ray radiation-reduced forms of cytochrome ba3 oxidase from Thermus thermophilus: structure of the reduced form of the enzyme.

Authors:  Bin Liu; Ying Chen; Tzanko Doukov; S Michael Soltis; C David Stout; James A Fee
Journal:  Biochemistry       Date:  2009-02-10       Impact factor: 3.162

5.  Accommodation of two diatomic molecules in cytochrome bo: insights into NO reductase activity in terminal oxidases.

Authors:  Takahiro Hayashi; Myat T Lin; Krithika Ganesan; Ying Chen; James A Fee; Robert B Gennis; Pierre Moënne-Loccoz
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6.  Increasing the X-ray diffraction power of protein crystals by dehydration: the case of bovine serum albumin and a survey of literature data.

Authors:  Irene Russo Krauss; Filomena Sica; Carlo Andrea Mattia; Antonello Merlino
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  6 in total

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