Literature DB >> 18782255

To pool or not to pool, from whether to when: applications of pooling to biospecimens subject to a limit of detection.

Enrique F Schisterman1, Albert Vexler.   

Abstract

Pooling of biological specimens has been utilised as a cost-efficient sampling strategy, but cost is not the unique limiting factor in biomarker development and evaluation. We examine the effect of different sampling strategies of biospecimens for exposure assessment that cannot be detected below a detection threshold (DT). The paper compares use of pooled samples to a randomly selected sample from a cohort in order to evaluate the efficiency of parameter estimates. The proposed approach shows that a pooling design is more efficient than a random sample strategy under certain circumstances. Moreover, because pooling minimises the amount of information lost below the DT, the use of pooled data is preferable (in a context of a parametric estimation) to using all available individual measurements, for certain values of the DT. We propose a combined design, which applies pooled and unpooled biospecimens, in order to capture the strengths of the different sampling strategies and overcome instrument limitations (i.e. DT). Several Monte Carlo simulations and an example based on actual biomarker data illustrate the results of the article.

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Year:  2008        PMID: 18782255      PMCID: PMC2749284          DOI: 10.1111/j.1365-3016.2008.00956.x

Source DB:  PubMed          Journal:  Paediatr Perinat Epidemiol        ISSN: 0269-5022            Impact factor:   3.980


  11 in total

1.  Statistical inference for the area under the receiver operating characteristic curve in the presence of random measurement error.

Authors:  E F Schisterman; D Faraggi; B Reiser; M Trevisan
Journal:  Am J Epidemiol       Date:  2001-07-15       Impact factor: 4.897

2.  Exposure estimation in the presence of nondetectable values: another look.

Authors:  M M Finkelstein; D K Verma
Journal:  AIHAJ       Date:  2001 Mar-Apr

3.  Using pooled exposure assessment to improve efficiency in case-control studies.

Authors:  C R Weinberg; D M Umbach
Journal:  Biometrics       Date:  1999-09       Impact factor: 2.571

4.  Effects of exposure measurement error when an exposure variable is constrained by a lower limit.

Authors:  David B Richardson; Antonio Ciampi
Journal:  Am J Epidemiol       Date:  2003-02-15       Impact factor: 4.897

5.  ROC curve analysis for biomarkers based on pooled assessments.

Authors:  David Faraggi; Benjamin Reiser; Enrique F Schisterman
Journal:  Stat Med       Date:  2003-08-15       Impact factor: 2.373

6.  Optimal cut-point and its corresponding Youden Index to discriminate individuals using pooled blood samples.

Authors:  Enrique F Schisterman; Neil J Perkins; Aiyi Liu; Howard Bondell
Journal:  Epidemiology       Date:  2005-01       Impact factor: 4.822

7.  The limitations due to exposure detection limits for regression models.

Authors:  Enrique F Schisterman; Albert Vexler; Brian W Whitcomb; Aiyi Liu
Journal:  Am J Epidemiol       Date:  2006-01-04       Impact factor: 4.897

8.  Effects of pooled samples.

Authors:  E Keeler; D Berwick
Journal:  Health Lab Sci       Date:  1976-04

9.  Epidemiologic evaluation of measurement data in the presence of detection limits.

Authors:  Jay H Lubin; Joanne S Colt; David Camann; Scott Davis; James R Cerhan; Richard K Severson; Leslie Bernstein; Patricia Hartge
Journal:  Environ Health Perspect       Date:  2004-12       Impact factor: 9.031

10.  Predictors of plasma concentrations of DDE and PCBs in a group of U.S. women.

Authors:  F Laden; L M Neas; D Spiegelman; S E Hankinson; W C Willett; K Ireland; M S Wolff; D J Hunter
Journal:  Environ Health Perspect       Date:  1999-01       Impact factor: 9.031

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  33 in total

1.  Specimen pooling for efficient use of biospecimens in studies of time to a common event.

Authors:  Paramita Saha-Chaudhuri; Clarice R Weinberg
Journal:  Am J Epidemiol       Date:  2013-05-02       Impact factor: 4.897

Review 2.  Pooled biological specimens for human biomonitoring of environmental chemicals: opportunities and limitations.

Authors:  Amy L Heffernan; Lesa L Aylward; Leisa-Maree L Toms; Peter D Sly; Matthew Macleod; Jochen F Mueller
Journal:  J Expo Sci Environ Epidemiol       Date:  2013-11-06       Impact factor: 5.563

3.  Estimation and testing based on data subject to measurement errors: from parametric to non-parametric likelihood methods.

Authors:  Albert Vexler; Wan-Min Tsai; Yaakov Malinovsky
Journal:  Stat Med       Date:  2011-07-29       Impact factor: 2.373

4.  Positing, fitting, and selecting regression models for pooled biomarker data.

Authors:  Emily M Mitchell; Robert H Lyles; Enrique F Schisterman
Journal:  Stat Med       Date:  2015-04-06       Impact factor: 2.373

5.  Semiparametric regression models for a right-skewed outcome subject to pooling.

Authors:  Emily M Mitchell; Robert H Lyles; Amita K Manatunga; Enrique F Schisterman
Journal:  Am J Epidemiol       Date:  2015-03-03       Impact factor: 4.897

6.  Exposure to Persistent Organic Pollutants and Birth Characteristics: The Upstate KIDS Study.

Authors:  Griffith A Bell; Neil Perkins; Germaine M Buck Louis; Kurunthachalam Kannan; Erin M Bell; Chongjing Gao; Edwina H Yeung
Journal:  Epidemiology       Date:  2019-11       Impact factor: 4.822

7.  Assessment of skewed exposure in case-control studies with pooling.

Authors:  Brian W Whitcomb; Neil J Perkins; Zhiwei Zhang; Aijun Ye; Robert H Lyles
Journal:  Stat Med       Date:  2012-03-22       Impact factor: 2.373

8.  Regression for skewed biomarker outcomes subject to pooling.

Authors:  Emily M Mitchell; Robert H Lyles; Amita K Manatunga; Michelle Danaher; Neil J Perkins; Enrique F Schisterman
Journal:  Biometrics       Date:  2014-02-12       Impact factor: 2.571

9.  Colonization of the Murine Oropharynx by Streptococcus pyogenes Is Governed by the Rgg2/3 Quorum Sensing System.

Authors:  Artemis Gogos; Michael J Federle
Journal:  Infect Immun       Date:  2020-09-18       Impact factor: 3.441

10.  Levels of metabolites of organophosphate pesticides, phthalates, and bisphenol A in pooled urine specimens from pregnant women participating in the Norwegian Mother and Child Cohort Study (MoBa).

Authors:  Xibiao Ye; Frank H Pierik; Jürgen Angerer; Helle Margrete Meltzer; Vincent W V Jaddoe; Henning Tiemeier; Jane A Hoppin; Matthew P Longnecker
Journal:  Int J Hyg Environ Health       Date:  2009-04-24       Impact factor: 5.840

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