Literature DB >> 25846980

Positing, fitting, and selecting regression models for pooled biomarker data.

Emily M Mitchell1, Robert H Lyles2, Enrique F Schisterman1.   

Abstract

Pooling biospecimens prior to performing lab assays can help reduce lab costs, preserve specimens, and reduce information loss when subject to a limit of detection. Because many biomarkers measured in epidemiological studies are positive and right-skewed, proper analysis of pooled specimens requires special methods. In this paper, we develop and compare parametric regression models for skewed outcome data subject to pooling, including a novel parameterization of the gamma distribution that takes full advantage of the gamma summation property. We also develop a Monte Carlo approximation of Akaike's Information Criterion applied to pooled data in order to guide model selection. Simulation studies and analysis of motivating data from the Collaborative Perinatal Project suggest that using Akaike's Information Criterion to select the best parametric model can help ensure valid inference and promote estimate precision.
Copyright © 2015 John Wiley & Sons, Ltd.

Entities:  

Keywords:  AIC; MCEM; biomarkers; gamma; pooled specimens; skewness

Mesh:

Substances:

Year:  2015        PMID: 25846980      PMCID: PMC4490092          DOI: 10.1002/sim.6496

Source DB:  PubMed          Journal:  Stat Med        ISSN: 0277-6715            Impact factor:   2.373


  22 in total

1.  Regression models for disease prevalence with diagnostic tests on pools of serum samples.

Authors:  S Vansteelandt; E Goetghebeur; T Verstraeten
Journal:  Biometrics       Date:  2000-12       Impact factor: 2.571

2.  Using pooled exposure assessment to improve efficiency in case-control studies.

Authors:  C R Weinberg; D M Umbach
Journal:  Biometrics       Date:  1999-09       Impact factor: 2.571

3.  Pooling biospecimens and limits of detection: effects on ROC curve analysis.

Authors:  Sunni L Mumford; Enrique F Schisterman; Albert Vexler; Aiyi Liu
Journal:  Biostatistics       Date:  2006-03-10       Impact factor: 5.899

4.  Important issues related to using pooled samples for environmental chemical biomonitoring.

Authors:  Samuel P Caudill
Journal:  Stat Med       Date:  2011-02-28       Impact factor: 2.373

5.  Two-stage hierarchical group testing for multiple infections with application to the infertility prevention project.

Authors:  Joshua M Tebbs; Christopher S McMahan; Christopher R Bilder
Journal:  Biometrics       Date:  2013-10-04       Impact factor: 2.571

6.  Latent class models for joint analysis of disease prevalence and high-dimensional semicontinuous biomarker data.

Authors:  Bo Zhang; Zhen Chen; Paul S Albert
Journal:  Biostatistics       Date:  2011-09-10       Impact factor: 5.899

7.  To pool or not to pool, from whether to when: applications of pooling to biospecimens subject to a limit of detection.

Authors:  Enrique F Schisterman; Albert Vexler
Journal:  Paediatr Perinat Epidemiol       Date:  2008-09       Impact factor: 3.980

8.  Model Selection Criteria for Missing-Data Problems Using the EM Algorithm.

Authors:  Joseph G Ibrahim; Hongtu Zhu; Niansheng Tang
Journal:  J Am Stat Assoc       Date:  2008-12-01       Impact factor: 5.033

Review 9.  The role of thyroid autoimmunity in fertility and pregnancy.

Authors:  Kris Poppe; Brigitte Velkeniers; Daniel Glinoer
Journal:  Nat Clin Pract Endocrinol Metab       Date:  2008-05-27

10.  Hybrid pooled-unpooled design for cost-efficient measurement of biomarkers.

Authors:  Enrique F Schisterman; Albert Vexler; Sunni L Mumford; Neil J Perkins
Journal:  Stat Med       Date:  2010-02-28       Impact factor: 2.373

View more
  7 in total

1.  Case-control data analysis for randomly pooled biomarkers.

Authors:  Neil J Perkins; Emily M Mitchell; Robert H Lyles; Enrique F Schisterman
Journal:  Biom J       Date:  2016-01-29       Impact factor: 2.207

2.  Gamma models for estimating the odds ratio for a skewed biomarker measured in pools and subject to errors.

Authors:  Dane R Van Domelen; Emily M Mitchell; Neil J Perkins; Enrique F Schisterman; Amita K Manatunga; Yijian Huang; Robert H Lyles
Journal:  Biostatistics       Date:  2021-04-10       Impact factor: 5.899

3.  Exposure to Persistent Organic Pollutants and Birth Characteristics: The Upstate KIDS Study.

Authors:  Griffith A Bell; Neil Perkins; Germaine M Buck Louis; Kurunthachalam Kannan; Erin M Bell; Chongjing Gao; Edwina H Yeung
Journal:  Epidemiology       Date:  2019-11       Impact factor: 4.822

4.  Minority stress and inflammatory mediators: covering moderates associations between perceived discrimination and salivary interleukin-6 in gay men.

Authors:  David Matthew Doyle; Lisa Molix
Journal:  J Behav Med       Date:  2016-08-17

5.  Estimating relative risk of a log-transformed exposure measured in pools.

Authors:  Emily M Mitchell; Torie C Plowden; Enrique F Schisterman
Journal:  Stat Med       Date:  2016-08-16       Impact factor: 2.373

6.  Shock-Induced Endothelial Dysfunction is Present in Patients With Occult Hypoperfusion After Trauma.

Authors:  Heather R Kregel; Gabrielle E Hatton; Kayla D Isbell; Hanne H Henriksen; Jakob Stensballe; Per I Johansson; Lillian S Kao; Charles E Wade
Journal:  Shock       Date:  2022-01-01       Impact factor: 3.533

7.  freqpcr: Estimation of population allele frequency using qPCR ΔΔCq measures from bulk samples.

Authors:  Masaaki Sudo; Masahiro Osakabe
Journal:  Mol Ecol Resour       Date:  2021-12-09       Impact factor: 8.678

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.