Literature DB >> 18723890

A "FLP-Out" system for controlled gene expression in Caenorhabditis elegans.

Roumen Voutev1, E Jane Albert Hubbard.   

Abstract

We present a two-part system for conditional FLP-out of FRT-flanked sequences in Caenorhabditis elegans to control gene activity in a spatially and/or temporally regulated manner. Using reporters, we assess the system for efficacy and demonstrate its use as a cell lineage marking tool. In addition, we construct and test a dominant-negative form of hlh-12, a gene that encodes a basic helix-loop-helix (bHLH) transcription factor required for proper distal tip cell (DTC) migration. We show that this allele can be conditionally expressed from a heat-inducible FLP recombinase and can interfere with DTC migration. Using the same DTC assay, we conditionally express an hlh-12 RNAi-hairpin and induce the DTC migration defect. Finally, we introduce a set of traditional and Gateway-compatible vectors to facilitate construction of plasmids for this technology using any promoter, reporter, and gene/hairpin of interest.

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Year:  2008        PMID: 18723890      PMCID: PMC2535667          DOI: 10.1534/genetics.108.090274

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  47 in total

1.  The gon-1 gene is required for gonadal morphogenesis in Caenorhabditis elegans.

Authors:  R Blelloch; S S Anna-Arriola; D Gao; Y Li; J Hodgkin; J Kimble
Journal:  Dev Biol       Date:  1999-12-01       Impact factor: 3.582

2.  Heritable and inducible genetic interference by double-stranded RNA encoded by transgenes.

Authors:  N Tavernarakis; S L Wang; M Dorovkov; A Ryazanov; M Driscoll
Journal:  Nat Genet       Date:  2000-02       Impact factor: 38.330

Review 3.  Helix-loop-helix proteins: regulators of transcription in eucaryotic organisms.

Authors:  M E Massari; C Murre
Journal:  Mol Cell Biol       Date:  2000-01       Impact factor: 4.272

4.  The rde-1 gene, RNA interference, and transposon silencing in C. elegans.

Authors:  H Tabara; M Sarkissian; W G Kelly; J Fleenor; A Grishok; L Timmons; A Fire; C C Mello
Journal:  Cell       Date:  1999-10-15       Impact factor: 41.582

5.  On the role of RNA amplification in dsRNA-triggered gene silencing.

Authors:  T Sijen; J Fleenor; F Simmer; K L Thijssen; S Parrish; L Timmons; R H Plasterk; A Fire
Journal:  Cell       Date:  2001-11-16       Impact factor: 41.582

6.  Creation of low-copy integrated transgenic lines in Caenorhabditis elegans.

Authors:  V Praitis; E Casey; D Collar; J Austin
Journal:  Genetics       Date:  2001-03       Impact factor: 4.562

7.  C. elegans ORFeome version 1.1: experimental verification of the genome annotation and resource for proteome-scale protein expression.

Authors:  Jérôme Reboul; Philippe Vaglio; Jean-François Rual; Philippe Lamesch; Monica Martinez; Christopher M Armstrong; Siming Li; Laurent Jacotot; Nicolas Bertin; Rekin's Janky; Troy Moore; James R Hudson; James L Hartley; Michael A Brasch; Jean Vandenhaute; Simon Boulton; Gregory A Endress; Sarah Jenna; Eric Chevet; Vasilis Papasotiropoulos; Peter P Tolias; Jason Ptacek; Mike Snyder; Raymond Huang; Mark R Chance; Hongmei Lee; Lynn Doucette-Stamm; David E Hill; Marc Vidal
Journal:  Nat Genet       Date:  2003-05       Impact factor: 38.330

8.  Systemic RNAi in C. elegans requires the putative transmembrane protein SID-1.

Authors:  William M Winston; Christina Molodowitch; Craig P Hunter
Journal:  Science       Date:  2002-02-07       Impact factor: 47.728

9.  Loss of the putative RNA-directed RNA polymerase RRF-3 makes C. elegans hypersensitive to RNAi.

Authors:  Femke Simmer; Marcel Tijsterman; Susan Parrish; Sandhya P Koushika; Michael L Nonet; Andrew Fire; Julie Ahringer; Ronald H A Plasterk
Journal:  Curr Biol       Date:  2002-08-06       Impact factor: 10.834

10.  Systematic functional analysis of the Caenorhabditis elegans genome using RNAi.

Authors:  Ravi S Kamath; Andrew G Fraser; Yan Dong; Gino Poulin; Richard Durbin; Monica Gotta; Alexander Kanapin; Nathalie Le Bot; Sergio Moreno; Marc Sohrmann; David P Welchman; Peder Zipperlen; Julie Ahringer
Journal:  Nature       Date:  2003-01-16       Impact factor: 49.962

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  40 in total

Review 1.  The early bird catches the worm: new technologies for the Caenorhabditis elegans toolkit.

Authors:  Xiao Xu; Stuart K Kim
Journal:  Nat Rev Genet       Date:  2011-10-04       Impact factor: 53.242

2.  Knock it down, switch it on.

Authors:  Jean-Louis Bessereau
Journal:  Nat Methods       Date:  2010-06       Impact factor: 28.547

3.  Autism-associated missense genetic variants impact locomotion and neurodevelopment in Caenorhabditis elegans.

Authors:  Wan-Rong Wong; Katherine I Brugman; Shayda Maher; Jun Young Oh; Kevin Howe; Mihoko Kato; Paul W Sternberg
Journal:  Hum Mol Genet       Date:  2019-07-01       Impact factor: 6.150

Review 4.  From genes to function: the C. elegans genetic toolbox.

Authors:  Thomas Boulin; Oliver Hobert
Journal:  Wiley Interdiscip Rev Dev Biol       Date:  2011-11-28       Impact factor: 5.814

5.  A "latent niche" mechanism for tumor initiation.

Authors:  Marie McGovern; Roumen Voutev; John Maciejowski; Ann K Corsi; E Jane Albert Hubbard
Journal:  Proc Natl Acad Sci U S A       Date:  2009-06-29       Impact factor: 11.205

Review 6.  A growing molecular toolbox for the functional analysis of microRNAs in Caenorhabditis elegans.

Authors:  Jeanyoung Jo; Aurora Esquela-Kerscher
Journal:  Brief Funct Genomics       Date:  2011-05-29       Impact factor: 4.241

7.  Repurposing an endogenous degradation system for rapid and targeted depletion of C. elegans proteins.

Authors:  Stephen T Armenti; Lauren L Lohmer; David R Sherwood; Jeremy Nance
Journal:  Development       Date:  2014-11-05       Impact factor: 6.868

8.  A New Tool for Inducible Gene Expression in Caenorhabditis elegans.

Authors:  Gabriela C Monsalve; Keith R Yamamoto; Jordan D Ward
Journal:  Genetics       Date:  2018-11-30       Impact factor: 4.562

9.  Conditional gene expression and RNAi using MEC-8-dependent splicing in C. elegans.

Authors:  Andrea Calixto; Charles Ma; Martin Chalfie
Journal:  Nat Methods       Date:  2010-04-04       Impact factor: 28.547

Review 10.  The application of CRISPR-Cas9 genome editing in Caenorhabditis elegans.

Authors:  Suhong Xu
Journal:  J Genet Genomics       Date:  2015-06-26       Impact factor: 4.275

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