Literature DB >> 23801671

From genes to function: the C. elegans genetic toolbox.

Thomas Boulin1, Oliver Hobert.   

Abstract

This review aims to provide an overview of the technologies which make the nematode Caenorhabditis elegans an attractive genetic model system. We describe transgenesis techniques and forward and reverse genetic approaches to isolate mutants and clone genes. In addition, we discuss the new possibilities offered by genome engineering strategies and next-generation genome analysis tools.
Copyright © 2011 Wiley Periodicals, Inc.

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Year:  2011        PMID： 23801671      PMCID： PMC3694748          DOI： 10.1002/wdev.1

Source DB:  PubMed          Journal:  Wiley Interdiscip Rev Dev Biol        ISSN： 1759-7684            Impact factor:   5.814


  138 in total

1.  Somatic misexpression of germline P granules and enhanced RNA interference in retinoblastoma pathway mutants.

Authors:  Duo Wang; Scott Kennedy; Darryl Conte; John K Kim; Harrison W Gabel; Ravi S Kamath; Craig C Mello; Gary Ruvkun
Journal:  Nature       Date:  2005-07-28       Impact factor: 49.962

Review 2.  SNPs: introduction and two-point mapping.

Authors:  David Fay; Aaron Bender
Journal:  WormBook       Date:  2008-09-25

3.  Tissue specificity of Caenorhabditis elegans enhanced RNA interference mutants.

Authors:  Jimmy J Zhuang; Craig P Hunter
Journal:  Genetics       Date:  2011-03-08       Impact factor: 4.562

4.  Targeted genome editing across species using ZFNs and TALENs.

Authors:  Andrew J Wood; Te-Wen Lo; Bryan Zeitler; Catherine S Pickle; Edward J Ralston; Andrew H Lee; Rainier Amora; Jeffrey C Miller; Elo Leung; Xiangdong Meng; Lei Zhang; Edward J Rebar; Philip D Gregory; Fyodor D Urnov; Barbara J Meyer
Journal:  Science       Date:  2011-06-23       Impact factor: 47.728

Review 5.  C. elegans deletion mutant screening.

Authors:  Robert J Barstead; Donald G Moerman
Journal:  Methods Mol Biol       Date:  2006

6.  Efficient high-resolution deletion discovery in Caenorhabditis elegans by array comparative genomic hybridization.

Authors:  Jason S Maydan; Stephane Flibotte; Mark L Edgley; Joanne Lau; Rebecca R Selzer; Todd A Richmond; Nathan J Pofahl; James H Thomas; Donald G Moerman
Journal:  Genome Res       Date:  2007-01-31       Impact factor: 9.043

7.  Differences in collagen prolyl 4-hydroxylase assembly between two Caenorhabditis nematode species despite high amino acid sequence identity of the enzyme subunits.

Authors:  Alan D Winter; Katriina Keskiaho; Liisa Kukkola; Gillian McCormack; Marie-Anne Felix; Johanna Myllyharju; Antony P Page
Journal:  Matrix Biol       Date:  2007-01-30       Impact factor: 11.583

8.  MosSCI and gateway compatible plasmid toolkit for constitutive and inducible expression of transgenes in the C. elegans germline.

Authors:  Eva Zeiser; Christian Frøkjær-Jensen; Erik Jorgensen; Julie Ahringer
Journal:  PLoS One       Date:  2011-05-26       Impact factor: 3.240

9.  Shotgun cloning of transposon insertions in the genome of Caenorhabditis elegans.

Authors:  Alexander M van der Linden; Ronald H A Plasterk
Journal:  Comp Funct Genomics       Date:  2004

10.  galign: a tool for rapid genome polymorphism discovery.

Authors:  Shai Shaham
Journal:  PLoS One       Date:  2009-09-25       Impact factor: 3.240
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  14 in total

1.  Investigating the spreading and toxicity of prion-like proteins using the metazoan model organism C. elegans.

Authors:  Carmen I Nussbaum-Krammer; Mário F Neto; Renée M Brielmann; Jesper S Pedersen; Richard I Morimoto
Journal:  J Vis Exp       Date:  2015-01-08       Impact factor: 1.355

Review 2.  Quantifying behavior to solve sensorimotor transformations: advances from worms and flies.

Authors:  Adam J Calhoun; Mala Murthy
Journal:  Curr Opin Neurobiol       Date:  2017-08-30       Impact factor: 6.627

Review 3.  Genome engineering: Drosophila melanogaster and beyond.

Authors:  Koen J T Venken; Alejandro Sarrion-Perdigones; Paul J Vandeventer; Nicholas S Abel; Audrey E Christiansen; Kristi L Hoffman
Journal:  Wiley Interdiscip Rev Dev Biol       Date:  2015-10-08       Impact factor: 5.814

Review 4.  Dissecting lipid droplet biology with coherent Raman scattering microscopy.

Authors:  Tao Chen; Ahmet Yavuz; Meng C Wang
Journal:  J Cell Sci       Date:  2021-05-11       Impact factor: 5.285

Review 5.  Caenorhabditis elegans as a model system for studying non-cell-autonomous mechanisms in protein-misfolding diseases.

Authors:  Carmen I Nussbaum-Krammer; Richard I Morimoto
Journal:  Dis Model Mech       Date:  2014-01       Impact factor: 5.758

6.  Reliable CRISPR/Cas9 Genome Engineering in Caenorhabditis elegans Using a Single Efficient sgRNA and an Easily Recognizable Phenotype.

Authors:  Sonia El Mouridi; Claire Lecroisey; Philippe Tardy; Marine Mercier; Alice Leclercq-Blondel; Nora Zariohi; Thomas Boulin
Journal:  G3 (Bethesda)       Date:  2017-05-05       Impact factor: 3.154

7.  A Caenorhabditis elegans behavioral assay distinguishes early stage prostate cancer patient urine from controls.

Authors:  Morgan Thompson; Noemi Sarabia Feria; Ally Yoshioka; Eugene Tu; Fehmi Civitci; Suzanne Estes; Josiah T Wagner
Journal:  Biol Open       Date:  2021-03-26       Impact factor: 2.422

Review 8.  Monitoring activity in neural circuits with genetically encoded indicators.

Authors:  Gerard J Broussard; Ruqiang Liang; Lin Tian
Journal:  Front Mol Neurosci       Date:  2014-12-05       Impact factor: 5.639

Review 9.  Targeting protein function: the expanding toolkit for conditional disruption.

Authors:  Amy E Campbell; Daimark Bennett
Journal:  Biochem J       Date:  2016-09-01       Impact factor: 3.857

10.  Genome-wide discovery of active regulatory elements and transcription factor footprints in Caenorhabditis elegans using DNase-seq.

Authors:  Margaret C W Ho; Porfirio Quintero-Cadena; Paul W Sternberg
Journal:  Genome Res       Date:  2017-10-26       Impact factor: 9.043
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