Literature DB >> 21624898

A growing molecular toolbox for the functional analysis of microRNAs in Caenorhabditis elegans.

Jeanyoung Jo1, Aurora Esquela-Kerscher.   

Abstract

With the growing number of microRNAs (miRNAs) being identified each year, more innovative molecular tools are required to efficiently characterize these small RNAs in living animal systems. Caenorhabditis elegans is a powerful model to study how miRNAs regulate gene expression and control diverse biological processes during development and in the adult. Genetic strategies such as large-scale miRNA deletion studies in nematodes have been used with limited success since the majority of miRNA genes do not exhibit phenotypes when individually mutated. Recent work has indicated that miRNAs function in complex regulatory networks with other small RNAs and protein-coding genes, and therefore the challenge will be to uncover these functional redundancies. The use of miRNA inhibitors such as synthetic antisense 2'-O-methyl oligoribonucleotides is emerging as a promising in vivo approach to dissect out the intricacies of miRNA regulation.

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Year:  2011        PMID: 21624898      PMCID: PMC3144738          DOI: 10.1093/bfgp/elr012

Source DB:  PubMed          Journal:  Brief Funct Genomics        ISSN: 2041-2649            Impact factor:   4.241


  35 in total

1.  A microRNA controlling left/right neuronal asymmetry in Caenorhabditis elegans.

Authors:  Robert J Johnston; Oliver Hobert
Journal:  Nature       Date:  2003-12-14       Impact factor: 49.962

2.  Post-embryonic expression of C. elegans microRNAs belonging to the lin-4 and let-7 families in the hypodermis and the reproductive system.

Authors:  A Esquela-Kerscher; S M Johnson; L Bai; K Saito; J Partridge; K L Reinert; F J Slack
Journal:  Dev Dyn       Date:  2005-12       Impact factor: 3.780

Review 3.  Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight?

Authors:  Witold Filipowicz; Suvendra N Bhattacharyya; Nahum Sonenberg
Journal:  Nat Rev Genet       Date:  2008-02       Impact factor: 53.242

Review 4.  Small non-coding RNAs in animal development.

Authors:  Giovanni Stefani; Frank J Slack
Journal:  Nat Rev Mol Cell Biol       Date:  2008-03       Impact factor: 94.444

5.  MicroRNA sponges: competitive inhibitors of small RNAs in mammalian cells.

Authors:  Margaret S Ebert; Joel R Neilson; Phillip A Sharp
Journal:  Nat Methods       Date:  2007-08-12       Impact factor: 28.547

Review 6.  Biogenesis of small RNAs in animals.

Authors:  V Narry Kim; Jinju Han; Mikiko C Siomi
Journal:  Nat Rev Mol Cell Biol       Date:  2009-02       Impact factor: 94.444

7.  RAS is regulated by the let-7 microRNA family.

Authors:  Steven M Johnson; Helge Grosshans; Jaclyn Shingara; Mike Byrom; Rich Jarvis; Angie Cheng; Emmanuel Labourier; Kristy L Reinert; David Brown; Frank J Slack
Journal:  Cell       Date:  2005-03-11       Impact factor: 41.582

8.  Inhibiting miRNA in Caenorhabditis elegans using a potent and selective antisense reagent.

Authors:  Genhua Zheng; Victor Ambros; Wen-Hong Li
Journal:  Silence       Date:  2010-04-01

9.  Many families of C. elegans microRNAs are not essential for development or viability.

Authors:  Ezequiel Alvarez-Saavedra; H Robert Horvitz
Journal:  Curr Biol       Date:  2010-01-21       Impact factor: 10.834

10.  Single-copy insertion of transgenes in Caenorhabditis elegans.

Authors:  Christian Frøkjaer-Jensen; M Wayne Davis; Christopher E Hopkins; Blake J Newman; Jason M Thummel; Søren-Peter Olesen; Morten Grunnet; Erik M Jorgensen
Journal:  Nat Genet       Date:  2008-10-26       Impact factor: 38.330

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  2 in total

1.  RILES, a novel method for temporal analysis of the in vivo regulation of miRNA expression.

Authors:  Safia Ezzine; Georges Vassaux; Bruno Pitard; Benoit Barteau; Jean-Marc Malinge; Patrick Midoux; Chantal Pichon; Patrick Baril
Journal:  Nucleic Acids Res       Date:  2013-09-05       Impact factor: 16.971

2.  The miR-20-Rest-Wnt signaling axis regulates neural progenitor cell differentiation.

Authors:  Yi Cui; Jin Han; Zhifeng Xiao; Tong Chen; Bin Wang; Bing Chen; Sumei Liu; Sufang Han; Yongxiang Fang; Jianshu Wei; Xiujie Wang; Xu Ma; Jianwu Dai
Journal:  Sci Rep       Date:  2016-03-21       Impact factor: 4.379

  2 in total

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