Literature DB >> 21969037

The early bird catches the worm: new technologies for the Caenorhabditis elegans toolkit.

Xiao Xu1, Stuart K Kim.   

Abstract

The inherent simplicity of Caenorhabditis elegans and its extensive genetic toolkit make it ideal for studying complex biological processes. Recent developments further increase the usefulness of the worm, including new methods for: altering gene expression, altering physiology using optogenetics, manipulating large numbers of worms, automating laborious processes and processing high-resolution images. These developments both enhance the worm as a model for studying processes such as development and ageing and make it an attractive model in areas such as neurobiology and behaviour.

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Mesh：

Year:  2011        PMID： 21969037      PMCID： PMC4719766          DOI： 10.1038/nrg3050

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN： 1471-0056            Impact factor:   53.242


  61 in total

1.  Light activation of channelrhodopsin-2 in excitable cells of Caenorhabditis elegans triggers rapid behavioral responses.

Authors:  Georg Nagel; Martin Brauner; Jana F Liewald; Nona Adeishvili; Ernst Bamberg; Alexander Gottschalk
Journal:  Curr Biol       Date:  2005-12-20       Impact factor: 10.834

2.  A simple cipher governs DNA recognition by TAL effectors.

Authors:  Matthew J Moscou; Adam J Bogdanove
Journal:  Science       Date:  2009-12-11       Impact factor: 47.728

3.  Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans.

Authors:  A Fire; S Xu; M K Montgomery; S A Kostas; S E Driver; C C Mello
Journal:  Nature       Date:  1998-02-19       Impact factor: 49.962

4.  Targeted genome editing across species using ZFNs and TALENs.

Authors:  Andrew J Wood; Te-Wen Lo; Bryan Zeitler; Catherine S Pickle; Edward J Ralston; Andrew H Lee; Rainier Amora; Jeffrey C Miller; Elo Leung; Xiangdong Meng; Lei Zhang; Edward J Rebar; Philip D Gregory; Fyodor D Urnov; Barbara J Meyer
Journal:  Science       Date:  2011-06-23       Impact factor: 47.728

5.  Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project.

Authors:  Mark B Gerstein; Zhi John Lu; Eric L Van Nostrand; Chao Cheng; Bradley I Arshinoff; Tao Liu; Kevin Y Yip; Rebecca Robilotto; Andreas Rechtsteiner; Kohta Ikegami; Pedro Alves; Aurelien Chateigner; Marc Perry; Mitzi Morris; Raymond K Auerbach; Xin Feng; Jing Leng; Anne Vielle; Wei Niu; Kahn Rhrissorrakrai; Ashish Agarwal; Roger P Alexander; Galt Barber; Cathleen M Brdlik; Jennifer Brennan; Jeremy Jean Brouillet; Adrian Carr; Ming-Sin Cheung; Hiram Clawson; Sergio Contrino; Luke O Dannenberg; Abby F Dernburg; Arshad Desai; Lindsay Dick; Andréa C Dosé; Jiang Du; Thea Egelhofer; Sevinc Ercan; Ghia Euskirchen; Brent Ewing; Elise A Feingold; Reto Gassmann; Peter J Good; Phil Green; Francois Gullier; Michelle Gutwein; Mark S Guyer; Lukas Habegger; Ting Han; Jorja G Henikoff; Stefan R Henz; Angie Hinrichs; Heather Holster; Tony Hyman; A Leo Iniguez; Judith Janette; Morten Jensen; Masaomi Kato; W James Kent; Ellen Kephart; Vishal Khivansara; Ekta Khurana; John K Kim; Paulina Kolasinska-Zwierz; Eric C Lai; Isabel Latorre; Amber Leahey; Suzanna Lewis; Paul Lloyd; Lucas Lochovsky; Rebecca F Lowdon; Yaniv Lubling; Rachel Lyne; Michael MacCoss; Sebastian D Mackowiak; Marco Mangone; Sheldon McKay; Desirea Mecenas; Gennifer Merrihew; David M Miller; Andrew Muroyama; John I Murray; Siew-Loon Ooi; Hoang Pham; Taryn Phippen; Elicia A Preston; Nikolaus Rajewsky; Gunnar Rätsch; Heidi Rosenbaum; Joel Rozowsky; Kim Rutherford; Peter Ruzanov; Mihail Sarov; Rajkumar Sasidharan; Andrea Sboner; Paul Scheid; Eran Segal; Hyunjin Shin; Chong Shou; Frank J Slack; Cindie Slightam; Richard Smith; William C Spencer; E O Stinson; Scott Taing; Teruaki Takasaki; Dionne Vafeados; Ksenia Voronina; Guilin Wang; Nicole L Washington; Christina M Whittle; Beijing Wu; Koon-Kiu Yan; Georg Zeller; Zheng Zha; Mei Zhong; Xingliang Zhou; Julie Ahringer; Susan Strome; Kristin C Gunsalus; Gos Micklem; X Shirley Liu; Valerie Reinke; Stuart K Kim; LaDeana W Hillier; Steven Henikoff; Fabio Piano; Michael Snyder; Lincoln Stein; Jason D Lieb; Robert H Waterston
Journal:  Science       Date:  2010-12-22       Impact factor: 47.728

Review 6.  Chemistry and the worm: Caenorhabditis elegans as a platform for integrating chemical and biological research.

Authors:  S Elizabeth Hulme; George M Whitesides
Journal:  Angew Chem Int Ed Engl       Date:  2011-04-15       Impact factor: 15.336

7.  High-throughput screen for novel antimicrobials using a whole animal infection model.

Authors:  Terence I Moy; Annie L Conery; Jonah Larkins-Ford; Gang Wu; Ralph Mazitschek; Gabriele Casadei; Kim Lewis; Anne E Carpenter; Frederick M Ausubel
Journal:  ACS Chem Biol       Date:  2009-07-17       Impact factor: 5.100

8.  Optical interrogation of neural circuits in Caenorhabditis elegans.

Authors:  Zengcai V Guo; Anne C Hart; Sharad Ramanathan
Journal:  Nat Methods       Date:  2009-11-08       Impact factor: 28.547

9.  Optogenetics.

Authors:  Karl Deisseroth
Journal:  Nat Methods       Date:  2010-12-20       Impact factor: 28.547

10.  Real-time multimodal optical control of neurons and muscles in freely behaving Caenorhabditis elegans.

Authors:  Jeffrey N Stirman; Matthew M Crane; Steven J Husson; Sebastian Wabnig; Christian Schultheis; Alexander Gottschalk; Hang Lu
Journal:  Nat Methods       Date:  2011-01-16       Impact factor: 28.547
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  20 in total

Review 1.  Monoaminergic signaling as a target for anthelmintic drug discovery: receptor conservation among the free-living and parasitic nematodes.

Authors:  Richard Komuniecki; Wen Jing Law; Aaron Jex; Peter Geldhof; John Gray; Bruce Bamber; Robin B Gasser
Journal:  Mol Biochem Parasitol       Date:  2012-02-11       Impact factor: 1.759

Review 2.  Nematodes ultrastructure: complex systems and processes.

Authors:  Maha M A Basyoni; Enas M A Rizk
Journal:  J Parasit Dis       Date:  2016-01-14

3.  Simultaneous Optogenetic Stimulation of Individual Pharyngeal Neurons and Monitoring of Feeding Behavior in Intact C. elegans.

Authors:  Nicholas F Trojanowski; Christopher Fang-Yen
Journal:  Methods Mol Biol       Date:  2015

4.  Investigating the spreading and toxicity of prion-like proteins using the metazoan model organism C. elegans.

Authors:  Carmen I Nussbaum-Krammer; Mário F Neto; Renée M Brielmann; Jesper S Pedersen; Richard I Morimoto
Journal:  J Vis Exp       Date:  2015-01-08       Impact factor: 1.355

Review 5.  Concepts in Cancer Modeling: A Brief History.

Authors:  Renee M Thomas; Terry Van Dyke; Glenn Merlino; Chi-Ping Day
Journal:  Cancer Res       Date:  2016-09-30       Impact factor: 12.701

Review 6.  Nematode-bacterium symbioses--cooperation and conflict revealed in the "omics" age.

Authors:  Kristen E Murfin; Adler R Dillman; Jeremy M Foster; Silvia Bulgheresi; Barton E Slatko; Paul W Sternberg; Heidi Goodrich-Blair
Journal:  Biol Bull       Date:  2012-08       Impact factor: 1.818

Review 7.  Probing mechanisms that underlie human neurodegenerative diseases in Drosophila.

Authors:  M Jaiswal; H Sandoval; K Zhang; V Bayat; H J Bellen
Journal:  Annu Rev Genet       Date:  2012-09-04       Impact factor: 16.830

8.  Optogenetic Perturbation of Individual C. elegans Pharyngeal Neurons While Monitoring Feeding Behavior.

Authors:  Nicholas F Trojanowski; Christopher Fang-Yen
Journal:  Methods Mol Biol       Date:  2022

9.  Microbial Rhodopsin Optogenetic Tools: Application for Analyses of Synaptic Transmission and of Neuronal Network Activity in Behavior.

Authors:  Amelie Bergs; Thilo Henss; Caspar Glock; Jatin Nagpal; Alexander Gottschalk
Journal:  Methods Mol Biol       Date:  2022

10.  Pathogenicity of Salmonella enterica in Caenorhabditis elegans relies on disseminated oxidative stress in the infected host.

Authors:  XiaoHui Sem; Mikael Rhen
Journal:  PLoS One       Date:  2012-09-28       Impact factor: 3.240
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