Literature DB >> 26336798

The application of CRISPR-Cas9 genome editing in Caenorhabditis elegans.

Suhong Xu1.   

Abstract

Genome editing using the Cas9 endonuclease of Streptococcus pyogenes has demonstrated unparalleled efficacy and facility for modifying genomes in a wide variety of organisms. Caenorhabditis elegans is one of the most convenient multicellular organisms for genetic analysis, and the application of this novel genome editing technique to this organism promises to revolutionize analysis of gene function in the future. CRISPR-Cas9 has been successfully used to generate imprecise insertions and deletions via non-homologous end-joining mechanisms and to create precise mutations by homology-directed repair from donor templates. Key variables are the methods used to deliver the Cas9 endonuclease and the efficiency of the single guide RNAs. CRISPR-Cas9-mediated editing appears to be highly specific in C. elegans, with no reported off-target effects. In this review, I briefly summarize recent progress in CRISPR-Cas9-based genome editing in C. elegans, highlighting technical improvements in mutagenesis and mutation detection, and discuss potential future applications of this technique.
Copyright © 2015 Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, and Genetics Society of China. Published by Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  C. elegans; CRISPR; Cas9; Genome editing; Homology-directed repair (HDR); Non-homologous end-joining (NHEJ); Somatic mutation

Mesh:

Substances:

Year:  2015        PMID: 26336798      PMCID: PMC4560834          DOI: 10.1016/j.jgg.2015.06.005

Source DB:  PubMed          Journal:  J Genet Genomics        ISSN: 1673-8527            Impact factor:   4.275


  79 in total

1.  Double nicking by RNA-guided CRISPR Cas9 for enhanced genome editing specificity.

Authors:  F Ann Ran; Patrick D Hsu; Chie-Yu Lin; Jonathan S Gootenberg; Silvana Konermann; Alexandro E Trevino; David A Scott; Azusa Inoue; Shogo Matoba; Yi Zhang; Feng Zhang
Journal:  Cell       Date:  2013-08-29       Impact factor: 41.582

2.  Targeted genome editing across species using ZFNs and TALENs.

Authors:  Andrew J Wood; Te-Wen Lo; Bryan Zeitler; Catherine S Pickle; Edward J Ralston; Andrew H Lee; Rainier Amora; Jeffrey C Miller; Elo Leung; Xiangdong Meng; Lei Zhang; Edward J Rebar; Philip D Gregory; Fyodor D Urnov; Barbara J Meyer
Journal:  Science       Date:  2011-06-23       Impact factor: 47.728

3.  Conditional targeted genome editing using somatically expressed TALENs in C. elegans.

Authors:  Ze Cheng; Peishan Yi; Xiangming Wang; Yongping Chai; Guoxin Feng; Yihong Yang; Xing Liang; Zhiwen Zhu; Wei Li; Guangshuo Ou
Journal:  Nat Biotechnol       Date:  2013-08-18       Impact factor: 54.908

Review 4.  C. elegans deletion mutant screening.

Authors:  Robert J Barstead; Donald G Moerman
Journal:  Methods Mol Biol       Date:  2006

5.  Improved detection of small deletions in complex pools of DNA.

Authors:  Mark Edgley; Anil D'Souza; Gary Moulder; Sheldon McKay; Bin Shen; Erin Gilchrist; Donald Moerman; Robert Barstead
Journal:  Nucleic Acids Res       Date:  2002-06-15       Impact factor: 16.971

6.  CAS9 transcriptional activators for target specificity screening and paired nickases for cooperative genome engineering.

Authors:  Prashant Mali; John Aach; P Benjamin Stranges; Kevin M Esvelt; Mark Moosburner; Sriram Kosuri; Luhan Yang; George M Church
Journal:  Nat Biotechnol       Date:  2013-08-01       Impact factor: 54.908

7.  Specific gene repression by CRISPRi system transferred through bacterial conjugation.

Authors:  Weiyue Ji; Derrick Lee; Eric Wong; Priyanka Dadlani; David Dinh; Verna Huang; Kendall Kearns; Sherry Teng; Susan Chen; John Haliburton; Graham Heimberg; Benjamin Heineike; Anusuya Ramasubramanian; Thomas Stevens; Kara J Helmke; Veronica Zepeda; Lei S Qi; Wendell A Lim
Journal:  ACS Synth Biol       Date:  2014-12-06       Impact factor: 5.110

8.  Dynamic imaging of genomic loci in living human cells by an optimized CRISPR/Cas system.

Authors:  Baohui Chen; Luke A Gilbert; Beth A Cimini; Joerg Schnitzbauer; Wei Zhang; Gene-Wei Li; Jason Park; Elizabeth H Blackburn; Jonathan S Weissman; Lei S Qi; Bo Huang
Journal:  Cell       Date:  2013-12-19       Impact factor: 41.582

9.  Serotonin and the neuropeptide PDF initiate and extend opposing behavioral states in C. elegans.

Authors:  Steven W Flavell; Navin Pokala; Evan Z Macosko; Dirk R Albrecht; Johannes Larsch; Cornelia I Bargmann
Journal:  Cell       Date:  2013-08-22       Impact factor: 41.582

10.  Genome editing with RNA-guided Cas9 nuclease in zebrafish embryos.

Authors:  Nannan Chang; Changhong Sun; Lu Gao; Dan Zhu; Xiufei Xu; Xiaojun Zhu; Jing-Wei Xiong; Jianzhong Jeff Xi
Journal:  Cell Res       Date:  2013-03-26       Impact factor: 25.617

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  6 in total

1.  SapTrap, a Toolkit for High-Throughput CRISPR/Cas9 Gene Modification in Caenorhabditis elegans.

Authors:  Matthew L Schwartz; Erik M Jorgensen
Journal:  Genetics       Date:  2016-02-02       Impact factor: 4.562

Review 2.  The Caenorhabditis elegans Transgenic Toolbox.

Authors:  Jeremy Nance; Christian Frøkjær-Jensen
Journal:  Genetics       Date:  2019-08       Impact factor: 4.562

3.  Probing and rearranging the transcription factor network controlling the C. elegans endoderm.

Authors:  Tobias Wiesenfahrt; Erin Osborne Nishimura; Janette Y Berg; James D McGhee
Journal:  Worm       Date:  2016-06-10

4.  Coordinated inhibition of C/EBP by Tribbles in multiple tissues is essential for Caenorhabditis elegans development.

Authors:  Kyung Won Kim; Nishant Thakur; Christopher A Piggott; Shizue Omi; Jolanta Polanowska; Yishi Jin; Nathalie Pujol
Journal:  BMC Biol       Date:  2016-12-07       Impact factor: 7.431

5.  The Bright Fluorescent Protein mNeonGreen Facilitates Protein Expression Analysis In Vivo.

Authors:  Lola Hostettler; Laura Grundy; Stéphanie Käser-Pébernard; Chantal Wicky; William R Schafer; Dominique A Glauser
Journal:  G3 (Bethesda)       Date:  2017-02-09       Impact factor: 3.154

6.  Precision genome editing using CRISPR-Cas9 and linear repair templates in C. elegans.

Authors:  Alexandre Paix; Andrew Folkmann; Geraldine Seydoux
Journal:  Methods       Date:  2017-04-07       Impact factor: 3.608

  6 in total

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