Literature DB >> 16963258

Neutron protein crystallography: current status and a brighter future.

Dean A A Myles1.   

Abstract

Hydrogen atoms are rarely seen in X-ray protein crystal structures, but are readily visualized by neutron crystallography, even at typical (1.5-2.5A) resolutions. Recent advances in neutron beamlines and deuterium labeling technologies have dramatically extended the scale and range of structures studied. High-quality neutron data can be collected to near atomic resolution ( approximately 1.5-2.5A) for proteins of 50-175kDa molecular weight, from perdeuterated samples, from crystals with volumes of 0.1mm(3) and at cryogenic temperatures (15K). These structures are providing unique and complementary insights into hydrogen-bonding interactions, protonation states, catalytic mechanisms and hydration states of biological structures that are not available from X-ray analysis alone. The new generation of spallation neutron sources promises further 10-50-fold gains in performance.

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Year:  2006        PMID: 16963258     DOI: 10.1016/j.sbi.2006.08.010

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  17 in total

1.  Crystallization and preliminary neutron diffraction studies of ADP-ribose pyrophosphatase-I from Thermus thermophilus HB8.

Authors:  Nobuo Okazaki; Motoyasu Adachi; Taro Tamada; Kazuo Kurihara; Takushi Ooga; Nobuo Kamiya; Seiki Kuramitsu; Ryota Kuroki
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-12-24

Review 2.  Large crystal growth by thermal control allows combined X-ray and neutron crystallographic studies to elucidate the protonation states in Aspergillus flavus urate oxidase.

Authors:  E Oksanen; M P Blakeley; F Bonneté; M T Dauvergne; F Dauvergne; M Budayova-Spano
Journal:  J R Soc Interface       Date:  2009-07-08       Impact factor: 4.118

3.  Neutron Crystal Structure of RAS GTPase Puts in Question the Protonation State of the GTP γ-Phosphate.

Authors:  Ryan Knihtila; Genevieve Holzapfel; Kevin Weiss; Flora Meilleur; Carla Mattos
Journal:  J Biol Chem       Date:  2015-10-29       Impact factor: 5.157

Review 4.  Introduction to protein crystallization.

Authors:  Alexander McPherson; Jose A Gavira
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2013-12-24       Impact factor: 1.056

5.  Neutron structures of the Helicobacter pylori 5'-methylthioadenosine nucleosidase highlight proton sharing and protonation states.

Authors:  Michael T Banco; Vidhi Mishra; Andreas Ostermann; Tobias E Schrader; Gary B Evans; Andrey Kovalevsky; Donald R Ronning
Journal:  Proc Natl Acad Sci U S A       Date:  2016-11-16       Impact factor: 11.205

6.  Neutron crystallographic studies of T4 lysozyme at cryogenic temperature.

Authors:  Le Li; Shantanu Shukla; Flora Meilleur; Robert F Standaert; Josh Pierce; Dean A A Myles; Matthew J Cuneo
Journal:  Protein Sci       Date:  2017-09-06       Impact factor: 6.725

7.  Pore hydration states of KcsA potassium channels in membranes.

Authors:  Joseph R Blasic; David L Worcester; Klaus Gawrisch; Philip Gurnev; Mihaela Mihailescu
Journal:  J Biol Chem       Date:  2015-09-14       Impact factor: 5.157

8.  Structure of HIV-1 protease in complex with potent inhibitor KNI-272 determined by high-resolution X-ray and neutron crystallography.

Authors:  Motoyasu Adachi; Takashi Ohhara; Kazuo Kurihara; Taro Tamada; Eijiro Honjo; Nobuo Okazaki; Shigeki Arai; Yoshinari Shoyama; Kaname Kimura; Hiroyoshi Matsumura; Shigeru Sugiyama; Hiroaki Adachi; Kazufumi Takano; Yusuke Mori; Koushi Hidaka; Tooru Kimura; Yoshio Hayashi; Yoshiaki Kiso; Ryota Kuroki
Journal:  Proc Natl Acad Sci U S A       Date:  2009-03-09       Impact factor: 11.205

9.  Hydration-state change of horse heart cytochrome c corresponding to trifluoroacetic-acid-induced unfolding.

Authors:  Yusuke Miyashita; Tetsuichi Wazawa; George Mogami; Satoshi Takahashi; Yoshihiro Sambongi; Makoto Suzuki
Journal:  Biophys J       Date:  2013-01-08       Impact factor: 4.033

10.  Preliminary neutron crystallographic analysis of selectively CH3-protonated deuterated rubredoxin from Pyrococcus furiosus.

Authors:  K L Weiss; F Meilleur; M P Blakeley; D A A Myles
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2008-05-24
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