Literature DB >> 31063148

Design guidelines for an electron diffractometer for structural chemistry and structural biology.

Jonas Heidler1, Radosav Pantelic2, Julian T C Wennmacher1, Christian Zaubitzer3, Ariane Fecteau-Lefebvre4, Kenneth N Goldie4, Elisabeth Müller1, Julian J Holstein5, Eric van Genderen1, Sacha De Carlo2, Tim Gruene1.   

Abstract

3D electron diffraction has reached a stage where the structures of chemical compounds can be solved productively. Instrumentation is lagging behind this development, and to date dedicated electron diffractometers for data collection based on the rotation method do not exist. Current studies use transmission electron microscopes as a workaround. These are optimized for imaging, which is not optimal for diffraction studies. The beam intensity is very high, it is difficult to create parallel beam illumination and the detectors used for imaging are of only limited use for diffraction studies. In this work, the combination of an EIGER hybrid pixel detector with a transmission electron microscope to construct a productive electron diffractometer is described. The construction not only refers to the combination of hardware but also to the calibration of the system, so that it provides rapid access to the experimental parameters that are necessary for processing diffraction data. Until fully integrated electron diffractometers become available, this describes a setup for productive and efficient operation in chemical crystallography. open access.

Entities:  

Keywords:  3D electron diffraction; EIGER X 1M detector; EIGER hybrid pixel detector; chemical crystallography; electron diffractometer; structural chemistry

Mesh:

Substances:

Year:  2019        PMID: 31063148      PMCID: PMC6503764          DOI: 10.1107/S2059798319003942

Source DB:  PubMed          Journal:  Acta Crystallogr D Struct Biol        ISSN: 2059-7983            Impact factor:   7.652


  33 in total

1.  The finer things in X-ray diffraction data collection.

Authors:  J W Pflugrath
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-10

2.  Quantitative comparison of zero-loss and conventional electron diffraction from two-dimensional and thin three-dimensional protein crystals.

Authors:  Koji Yonekura; Saori Maki-Yonekura; Keiichi Namba
Journal:  Biophys J       Date:  2002-05       Impact factor: 4.033

3.  A practical method to detect and correct for lens distortion in the TEM.

Authors:  Gian Carlo Capitani; Peter Oleynikov; Sven Hovmöller; Marcello Mellini
Journal:  Ultramicroscopy       Date:  2005-07-01       Impact factor: 2.689

4.  The PILATUS 1M detector.

Authors:  Ch Broennimann; E F Eikenberry; B Henrich; R Horisberger; G Huelsen; E Pohl; B Schmitt; C Schulze-Briese; M Suzuki; T Tomizaki; H Toyokawa; A Wagner
Journal:  J Synchrotron Radiat       Date:  2006-02-17       Impact factor: 2.616

Review 5.  Small molecule conformational preferences derived from crystal structure data. A medicinal chemistry focused analysis.

Authors:  Ken A Brameld; Bernd Kuhn; Deborah C Reuter; Martin Stahl
Journal:  J Chem Inf Model       Date:  2008-01-10       Impact factor: 4.956

6.  XDS.

Authors:  Wolfgang Kabsch
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-01-22

7.  Ab-initio crystal structure analysis and refinement approaches of oligo p-benzamides based on electron diffraction data.

Authors:  Tatiana E Gorelik; Jacco van de Streek; Andreas F M Kilbinger; Gunther Brunklaus; Ute Kolb
Journal:  Acta Crystallogr B       Date:  2012-02-25

8.  Integration, scaling, space-group assignment and post-refinement.

Authors:  Wolfgang Kabsch
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-01-22

Review 9.  Neutron crystallography: opportunities, challenges, and limitations.

Authors:  Matthew P Blakeley; Paul Langan; Nobuo Niimura; Alberto Podjarny
Journal:  Curr Opin Struct Biol       Date:  2008-08-07       Impact factor: 6.809

Review 10.  The integration of macromolecular diffraction data.

Authors:  Andrew G W Leslie
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-12-14
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  4 in total

Review 1.  Electron Diffraction of 3D Molecular Crystals.

Authors:  Ambarneil Saha; Shervin S Nia; José A Rodríguez
Journal:  Chem Rev       Date:  2022-08-15       Impact factor: 72.087

2.  3D-structured supports create complete data sets for electron crystallography.

Authors:  Julian T C Wennmacher; Christian Zaubitzer; Teng Li; Yeon Kyoung Bahk; Jing Wang; Jeroen A van Bokhoven; Tim Gruene
Journal:  Nat Commun       Date:  2019-07-25       Impact factor: 14.919

Review 3.  3D Electron Diffraction for Chemical Analysis: Instrumentation Developments and Innovative Applications.

Authors:  Tim Gruene; Enrico Mugnaioli
Journal:  Chem Rev       Date:  2021-09-17       Impact factor: 60.622

4.  Ab Initio Determination of Peptide Structures by MicroED.

Authors:  Chih-Te Zee; Ambarneil Saha; Michael R Sawaya; Jose A Rodriguez
Journal:  Methods Mol Biol       Date:  2021
  4 in total

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