Literature DB >> 14646103

Crystallization and preliminary neutron analysis of the dissimilatory sulfite reductase D (DsrD) protein from the sulfate-reducing bacterium Desulfovibrio vulgaris.

Toshiyuki Chatake1, Nobuhiro Mizuno, Gerrit Voordouw, Yoshiki Higuchi, Shigeki Arai, Ichiro Tanaka, Nobuo Niimura.   

Abstract

Dissimilatory sulfite reductase D (DsrD) from Desulfovibrio vulgaris has been crystallized for a neutron diffraction study. The initial crystals obtained were too small for the neutron experiment. In order to obtain a larger crystal (>1 mm3), a combination of two techniques was developed to determine the optimum crystallization conditions: a crystallization phase diagram was obtained, followed by crystal-quality assessment via X-ray diffraction. Using conditions determined in this manner, a large single crystal (1.7 mm3) of DsrD protein was subsequently grown in D(2)O solution by the macroseeding technique. A neutron diffraction experiment was carried out using the BIX-3 diffractometer at the Japan Atomic Energy Research Institute (JAERI), collecting data to 2.4 A resolution from an optimized crystal.

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Year:  2003        PMID: 14646103     DOI: 10.1107/s0907444903020596

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  7 in total

1.  High-resolution X-ray study of the effects of deuteration on crystal growth and the crystal structure of proteinase K.

Authors:  Toshiyuki Chatake; Takuya Ishikawa; Yasuhide Yanagisawa; Taro Yamada; Ichiro Tanaka; Satoru Fujiwara; Yukio Morimoro
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-10-25

2.  Preliminary time-of-flight neutron diffraction study on diisopropyl fluorophosphatase (DFPase) from Loligo vulgaris.

Authors:  Marc-Michael Blum; Alexander Koglin; Heinz Rüterjans; Benno Schoenborn; Paul Langan; Julian C-H Chen
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2006-12-22

3.  A preliminary neutron diffraction study of gamma-chymotrypsin.

Authors:  Walter R P Novak; Aaron G Moulin; Matthew P Blakeley; Ilme Schlichting; Gregory A Petsko; Dagmar Ringe
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-02-26

Review 4.  Neutron crystallography: opportunities, challenges, and limitations.

Authors:  Matthew P Blakeley; Paul Langan; Nobuo Niimura; Alberto Podjarny
Journal:  Curr Opin Struct Biol       Date:  2008-08-07       Impact factor: 6.809

5.  Structural studies of RFCCtf18 reveal a novel chromatin recruitment role for Dcc1.

Authors:  Benjamin O Wade; Hon Wing Liu; Catarina P Samora; Frank Uhlmann; Martin R Singleton
Journal:  EMBO Rep       Date:  2017-02-10       Impact factor: 8.807

6.  Structural analysis reveals DNA binding properties of Rv2827c, a hypothetical protein from Mycobacterium tuberculosis.

Authors:  Robert Janowski; Santosh Panjikar; Ali Nasser Eddine; Stefan H E Kaufmann; Manfred S Weiss
Journal:  J Struct Funct Genomics       Date:  2009-01-31

Review 7.  Evaluation of models determined by neutron diffraction and proposed improvements to their validation and deposition.

Authors:  Dorothee Liebschner; Pavel V Afonine; Nigel W Moriarty; Paul Langan; Paul D Adams
Journal:  Acta Crystallogr D Struct Biol       Date:  2018-07-24       Impact factor: 7.652

  7 in total

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