Literature DB >> 18607094

Crystallization and preliminary X-ray diffraction studies of a novel ferredoxin involved in the dioxygenation of carbazole by Novosphingobium sp. KA1.

Takashi Umeda1, Junichi Katsuki, Yusuke Usami, Kengo Inoue, Haruko Noguchi, Zui Fujimoto, Yuji Ashikawa, Hisakazu Yamane, Hideaki Nojiri.   

Abstract

Novosphingobium sp. KA1 uses carbazole 1,9a-dioxygenase (CARDO) as the first dioxygenase in its carbazole-degradation pathway. The CARDO of KA1 contains a terminal oxygenase component and two electron-transfer components: ferredoxin and ferredoxin reductase. In contrast to the CARDO systems of other species, the ferredoxin component of KA1 is a putidaredoxin-type protein. This novel ferredoxin was crystallized at 293 K by the hanging-drop vapour-diffusion method using PEG MME 550 as the precipitant under anaerobic conditions. The crystals belong to space group C222(1) and diffraction data were collected to a resolution of 1.9 A (the diffraction limit was 1.6 A).

Entities:  

Mesh:

Substances:

Year:  2008        PMID: 18607094      PMCID: PMC2443972          DOI: 10.1107/S1744309108016278

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  29 in total

1.  Ferredoxins as electron carriers in photosynthesis and in the biological production and consumption of hydrogen gas.

Authors:  K TAGAWA; D I ARNON
Journal:  Nature       Date:  1962-08-11       Impact factor: 49.962

2.  Crystallization and preliminary X-ray diffraction studies of the terminal oxygenase component of carbazole 1,9a-dioxygenase from Nocardioides aromaticivorans IC177.

Authors:  Kengo Inoue; Yuji Ashikawa; Yusuke Usami; Haruko Noguchi; Zui Fujimoto; Hisakazu Yamane; Hideaki Nojiri
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2006-11-04

Review 3.  Cytochrome P450 systems--biological variations of electron transport chains.

Authors:  Frank Hannemann; Andreas Bichet; Kerstin M Ewen; Rita Bernhardt
Journal:  Biochim Biophys Acta       Date:  2006-08-02

Review 4.  Aerobic degradation of polychlorinated biphenyls.

Authors:  Dietmar H Pieper
Journal:  Appl Microbiol Biotechnol       Date:  2004-12-22       Impact factor: 4.813

5.  Crystallization and preliminary crystallographic analysis of the ferredoxin component of carbazole 1,9a-dioxygenase from Nocardioides aromaticivorans IC177.

Authors:  Kengo Inoue; Yuji Ashikawa; Yusuke Usami; Haruko Noguchi; Zui Fujimoto; Hisakazu Yamane; Hideaki Nojiri
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-09-19

6.  Crystallization and preliminary X-ray diffraction analysis of the electron-transfer complex between the terminal oxygenase component and ferredoxin in the Rieske non-haem iron oxygenase system carbazole 1,9a-dioxygenase.

Authors:  Yuji Ashikawa; Zui Fujimoto; Haruko Noguchi; Hiroshi Habe; Toshio Omori; Hisakazu Yamane; Hideaki Nojiri
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2005-06-01

7.  Structure of the terminal oxygenase component of angular dioxygenase, carbazole 1,9a-dioxygenase.

Authors:  Hideaki Nojiri; Yuji Ashikawa; Haruko Noguchi; Jeong-Won Nam; Masaaki Urata; Zui Fujimoto; Hiromasa Uchimura; Tohru Terada; Shugo Nakamura; Kentaro Shimizu; Takako Yoshida; Hiroshi Habe; Toshio Omori
Journal:  J Mol Biol       Date:  2005-08-12       Impact factor: 5.469

8.  Structure of a [2Fe-2S] ferredoxin from Rhodobacter capsulatus likely involved in Fe-S cluster biogenesis and conformational changes observed upon reduction.

Authors:  Germaine Sainz; Jean Jakoncic; Larry C Sieker; Vivian Stojanoff; Nukri Sanishvili; Marcel Asso; Patrick Bertrand; Jean Armengaud; Yves Jouanneau
Journal:  J Biol Inorg Chem       Date:  2006-01-10       Impact factor: 3.358

9.  Plasmid pCAR3 contains multiple gene sets involved in the conversion of carbazole to anthranilate.

Authors:  Masaaki Urata; Hiromasa Uchimura; Haruko Noguchi; Tomoya Sakaguchi; Tetsuo Takemura; Kaori Eto; Hiroshi Habe; Toshio Omori; Hisakazu Yamane; Hideaki Nojiri
Journal:  Appl Environ Microbiol       Date:  2006-05       Impact factor: 4.792

10.  A three-component dicamba O-demethylase from Pseudomonas maltophilia, strain DI-6: gene isolation, characterization, and heterologous expression.

Authors:  Patricia L Herman; Mark Behrens; Sarbani Chakraborty; Brenda M Chrastil; Joseph Barycki; Donald P Weeks
Journal:  J Biol Chem       Date:  2005-04-26       Impact factor: 5.157

View more
  4 in total

1.  Crystallization and preliminary X-ray diffraction studies of the reduced form of the terminal oxygenase component of the Rieske nonhaem iron oxygenase system carbazole 1,9a-dioxygenase.

Authors:  Jun Matsuzawa; Takashi Umeda; Hiroki Aikawa; Chiho Suzuki; Zui Fujimoto; Kazunori Okada; Hisakazu Yamane; Hideaki Nojiri
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2013-10-30

2.  Crystallization and preliminary X-ray diffraction studies of a terminal oxygenase of carbazole 1,9a-dioxygenase from Novosphingobium sp. KA1.

Authors:  Takashi Umeda; Junichi Katsuki; Yuji Ashikawa; Yusuke Usami; Kengo Inoue; Haruko Noguchi; Zui Fujimoto; Hisakazu Yamane; Hideaki Nojiri
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-10-28

3.  Crystallization and preliminary X-ray diffraction studies of a ferredoxin reductase component of carbazole 1,9a-dioxygenase from Novosphingobium sp. KA1.

Authors:  Takashi Umeda; Junichi Katsuki; Yuji Ashikawa; Yusuke Usami; Kengo Inoue; Haruko Noguchi; Zui Fujimoto; Hisakazu Yamane; Hideaki Nojiri
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-05-29

4.  Three-Component O-Demethylase System Essential for Catabolism of a Lignin-Derived Biphenyl Compound in Sphingobium sp. Strain SYK-6.

Authors:  Taichi Yoshikata; Kazuya Suzuki; Naofumi Kamimura; Masahiro Namiki; Shojiro Hishiyama; Takuma Araki; Daisuke Kasai; Yuichiro Otsuka; Masaya Nakamura; Masao Fukuda; Yoshihiro Katayama; Eiji Masai
Journal:  Appl Environ Microbiol       Date:  2014-09-12       Impact factor: 4.792

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.