Literature DB >> 24192370

Crystallization and preliminary X-ray diffraction studies of the reduced form of the terminal oxygenase component of the Rieske nonhaem iron oxygenase system carbazole 1,9a-dioxygenase.

Jun Matsuzawa1, Takashi Umeda, Hiroki Aikawa, Chiho Suzuki, Zui Fujimoto, Kazunori Okada, Hisakazu Yamane, Hideaki Nojiri.   

Abstract

The initial reaction of bacterial carbazole degradation is catalysed by carbazole 1,9a-dioxygenase, which consists of terminal oxygenase, ferredoxin and ferredoxin reductase components. The reduced form of the terminal oxygenase component was crystallized at 293 K by the hanging-drop vapour-diffusion method using PEG MME 550 as the precipitant under anaerobic conditions. The crystals diffracted to a resolution of 1.74 Å and belonged to space group P6(5), with unit-cell parameters a = b = 92.0, c = 243.6 Å. The asymmetric unit contained a trimer of terminal oxygenase molecules.

Entities:  

Keywords:  Janthinobacterium sp. J3; Rieske nonhaem iron oxygenase; carbazole 1,9a-dioxygenase; reduced form; terminal oxygenase component

Mesh:

Substances:

Year:  2013        PMID: 24192370      PMCID: PMC3818054          DOI: 10.1107/S1744309113026754

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  18 in total

1.  Purification and characterization of carbazole 1,9a-dioxygenase, a three-component dioxygenase system of Pseudomonas resinovorans strain CA10.

Authors:  Jeong-Won Nam; Hideaki Nojiri; Haruko Noguchi; Hiromasa Uchimura; Takako Yoshida; Hiroshi Habe; Hisakazu Yamane; Toshio Omori
Journal:  Appl Environ Microbiol       Date:  2002-12       Impact factor: 4.792

2.  The conserved Rieske oxygenase DAF-36/Neverland is a novel cholesterol-metabolizing enzyme.

Authors:  Takuji Yoshiyama-Yanagawa; Sora Enya; Yuko Shimada-Niwa; Shunsuke Yaguchi; Yoshikazu Haramoto; Takeshi Matsuya; Kensuke Shiomi; Yasunori Sasakura; Shuji Takahashi; Makoto Asashima; Hiroshi Kataoka; Ryusuke Niwa
Journal:  J Biol Chem       Date:  2011-06-01       Impact factor: 5.157

3.  Crystallization and preliminary X-ray diffraction analysis of the electron-transfer complex between the terminal oxygenase component and ferredoxin in the Rieske non-haem iron oxygenase system carbazole 1,9a-dioxygenase.

Authors:  Yuji Ashikawa; Zui Fujimoto; Haruko Noguchi; Hiroshi Habe; Toshio Omori; Hisakazu Yamane; Hideaki Nojiri
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2005-06-01

4.  Structure of the terminal oxygenase component of angular dioxygenase, carbazole 1,9a-dioxygenase.

Authors:  Hideaki Nojiri; Yuji Ashikawa; Haruko Noguchi; Jeong-Won Nam; Masaaki Urata; Zui Fujimoto; Hiromasa Uchimura; Tohru Terada; Shugo Nakamura; Kentaro Shimizu; Takako Yoshida; Hiroshi Habe; Toshio Omori
Journal:  J Mol Biol       Date:  2005-08-12       Impact factor: 5.469

5.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

6.  2-Oxoquinoline 8-monooxygenase oxygenase component: active site modulation by Rieske-[2Fe-2S] center oxidation/reduction.

Authors:  Berta Maria Martins; Tatiana Svetlitchnaia; Holger Dobbek
Journal:  Structure       Date:  2005-05       Impact factor: 5.006

7.  Molecular mechanism of the redox-dependent interaction between NADH-dependent ferredoxin reductase and Rieske-type [2Fe-2S] ferredoxin.

Authors:  Miki Senda; Shinya Kishigami; Shigenobu Kimura; Masao Fukuda; Tetsuo Ishida; Toshiya Senda
Journal:  J Mol Biol       Date:  2007-08-19       Impact factor: 5.469

8.  Crystallization and preliminary X-ray diffraction studies of a novel ferredoxin involved in the dioxygenation of carbazole by Novosphingobium sp. KA1.

Authors:  Takashi Umeda; Junichi Katsuki; Yusuke Usami; Kengo Inoue; Haruko Noguchi; Zui Fujimoto; Yuji Ashikawa; Hisakazu Yamane; Hideaki Nojiri
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2008-06-11

9.  Structural insight into the substrate- and dioxygen-binding manner in the catalytic cycle of rieske nonheme iron oxygenase system, carbazole 1,9a-dioxygenase.

Authors:  Yuji Ashikawa; Zui Fujimoto; Yusuke Usami; Kengo Inoue; Haruko Noguchi; Hisakazu Yamane; Hideaki Nojiri
Journal:  BMC Struct Biol       Date:  2012-06-24

10.  Overview of the CCP4 suite and current developments.

Authors:  Martyn D Winn; Charles C Ballard; Kevin D Cowtan; Eleanor J Dodson; Paul Emsley; Phil R Evans; Ronan M Keegan; Eugene B Krissinel; Andrew G W Leslie; Airlie McCoy; Stuart J McNicholas; Garib N Murshudov; Navraj S Pannu; Elizabeth A Potterton; Harold R Powell; Randy J Read; Alexei Vagin; Keith S Wilson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18
View more
  1 in total

1.  Crystallization and preliminary X-ray diffraction analyses of the redox-controlled complex of terminal oxygenase and ferredoxin components in the Rieske nonhaem iron oxygenase carbazole 1,9a-dioxygenase.

Authors:  Jun Matsuzawa; Hiroki Aikawa; Takashi Umeda; Yuji Ashikawa; Chiho Suzuki-Minakuchi; Yoshiaki Kawano; Zui Fujimoto; Kazunori Okada; Hisakazu Yamane; Hideaki Nojiri
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-09-25       Impact factor: 1.056

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.