Literature DB >> 21045300

Crystallization and preliminary X-ray diffraction studies of a terminal oxygenase of carbazole 1,9a-dioxygenase from Novosphingobium sp. KA1.

Takashi Umeda1, Junichi Katsuki, Yuji Ashikawa, Yusuke Usami, Kengo Inoue, Haruko Noguchi, Zui Fujimoto, Hisakazu Yamane, Hideaki Nojiri.   

Abstract

Carbazole 1,9a-dioxygenase (CARDO) is the initial dioxygenase in the carbazole-degradation pathway of Novosphingobium sp. KA1. The CARDO from KA1 consists of a terminal oxygenase (Oxy), a putidaredoxin-type ferredoxin and a ferredoxin reductase. The Oxy from Novosphingobium sp. KA1 was crystallized at 277 K using the hanging-drop vapour-diffusion method with ammonium sulfate as the precipitant. Diffraction data were collected to a resolution of 2.1 Å. The crystals belonged to the monoclinic space group P2(1). Self-rotation function analysis suggested that the asymmetric unit contained two Oxy trimers; the Matthews coefficient and solvent content were calculated to be 5.9 Å(3) Da(-1) and 79.1%, respectively.

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Year:  2010        PMID: 21045300      PMCID: PMC3001653          DOI: 10.1107/S1744309110034949

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  20 in total

1.  Mutagenic profiles of carbazole in the male germ cells of Swiss albino mice.

Authors:  Anand M Jha; Mithilesh K Bharti
Journal:  Mutat Res       Date:  2002-03-20       Impact factor: 2.433

2.  Similar enzymes, different structures: phthalate dioxygenase is an alpha3alpha3 stacked hexamer, not an alpha3beta3 trimer like "normal" Rieske oxygenases.

Authors:  Michael Tarasev; Catherine S Kaddis; Sheng Yin; Joseph A Loo; John Burgner; David P Ballou
Journal:  Arch Biochem Biophys       Date:  2007-07-14       Impact factor: 4.013

3.  Effects of eight polycyclic aromatic compounds on the survival and reproduction of Enchytraeus crypticus (Oligochaeta, Clitellata).

Authors:  Line E Sverdrup; John Jensen; Axel E Kelley; Paul H Krogh; Jørgen Stenersen
Journal:  Environ Toxicol Chem       Date:  2002-01       Impact factor: 3.742

4.  Structure of the terminal oxygenase component of angular dioxygenase, carbazole 1,9a-dioxygenase.

Authors:  Hideaki Nojiri; Yuji Ashikawa; Haruko Noguchi; Jeong-Won Nam; Masaaki Urata; Zui Fujimoto; Hiromasa Uchimura; Tohru Terada; Shugo Nakamura; Kentaro Shimizu; Takako Yoshida; Hiroshi Habe; Toshio Omori
Journal:  J Mol Biol       Date:  2005-08-12       Impact factor: 5.469

5.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

6.  2-Oxoquinoline 8-monooxygenase oxygenase component: active site modulation by Rieske-[2Fe-2S] center oxidation/reduction.

Authors:  Berta Maria Martins; Tatiana Svetlitchnaia; Holger Dobbek
Journal:  Structure       Date:  2005-05       Impact factor: 5.006

7.  Crystallization and preliminary X-ray diffraction studies of a ferredoxin reductase component of carbazole 1,9a-dioxygenase from Novosphingobium sp. KA1.

Authors:  Takashi Umeda; Junichi Katsuki; Yuji Ashikawa; Yusuke Usami; Kengo Inoue; Haruko Noguchi; Zui Fujimoto; Hisakazu Yamane; Hideaki Nojiri
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-05-29

8.  Crystal structure of dicamba monooxygenase: a Rieske nonheme oxygenase that catalyzes oxidative demethylation.

Authors:  Razvan Dumitru; Wen Zhi Jiang; Donald P Weeks; Mark A Wilson
Journal:  J Mol Biol       Date:  2009-07-15       Impact factor: 5.469

9.  Crystallization and preliminary X-ray diffraction studies of a novel ferredoxin involved in the dioxygenation of carbazole by Novosphingobium sp. KA1.

Authors:  Takashi Umeda; Junichi Katsuki; Yusuke Usami; Kengo Inoue; Haruko Noguchi; Zui Fujimoto; Yuji Ashikawa; Hisakazu Yamane; Hideaki Nojiri
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2008-06-11

10.  Structure of an aromatic-ring-hydroxylating dioxygenase-naphthalene 1,2-dioxygenase.

Authors:  B Kauppi; K Lee; E Carredano; R E Parales; D T Gibson; H Eklund; S Ramaswamy
Journal:  Structure       Date:  1998-05-15       Impact factor: 5.006

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  1 in total

1.  Electron Transport in a Dioxygenase-Ferredoxin Complex: Long Range Charge Coupling between the Rieske and Non-Heme Iron Center.

Authors:  Wayne K Dawson; Ryota Jono; Tohru Terada; Kentaro Shimizu
Journal:  PLoS One       Date:  2016-09-22       Impact factor: 3.240

  1 in total

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