Literature DB >> 20516607

Crystallization and preliminary X-ray diffraction studies of a ferredoxin reductase component of carbazole 1,9a-dioxygenase from Novosphingobium sp. KA1.

Takashi Umeda1, Junichi Katsuki, Yuji Ashikawa, Yusuke Usami, Kengo Inoue, Haruko Noguchi, Zui Fujimoto, Hisakazu Yamane, Hideaki Nojiri.   

Abstract

Carbazole 1,9a-dioxygenase (CARDO) is the initial enzyme of the carbazole-degradation pathway. The CARDO of Novosphingobium sp. KA1 consists of a terminal oxygenase, a putidaredoxin-type ferredoxin and a ferredoxin-NADH oxidoreductase (Red) and is classified as a class IIA Rieske oxygenase. Red from KA1 was crystallized at 278 K by the hanging-drop vapour-diffusion method using PEG 4000. The crystal diffracted to 1.58 A resolution and belonged to space group P3(2), with unit-cell parameters a = b = 92.2, c = 78.6 A, alpha = gamma = 90, beta = 120 degrees . Preliminary analysis of the X-ray diffraction data revealed that the asymmetric unit contained two Red monomers. The crystal appeared to be a merohedral twin, with a twin fraction of 0.32 and twin law (-h, -k, l).

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Year:  2010        PMID: 20516607      PMCID: PMC2882777          DOI: 10.1107/S1744309110014491

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  18 in total

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Authors:  T Senda; T Yamada; N Sakurai; M Kubota; T Nishizaki; E Masai; M Fukuda; Y Mitsuidagger
Journal:  J Mol Biol       Date:  2000-12-01       Impact factor: 5.469

2.  The CCP4 suite: programs for protein crystallography.

Authors: 
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1994-09-01

3.  Crystallization and preliminary X-ray diffraction studies of the ferredoxin reductase component in the Rieske nonhaem iron oxygenase system carbazole 1,9a-dioxygenase.

Authors:  Yuji Ashikawa; Hiromasa Uchimura; Zui Fujimoto; Kengo Inoue; Haruko Noguchi; Hisakazu Yamane; Hideaki Nojiri
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-05-12

4.  The Sphingomonas plasmid pCAR3 is involved in complete mineralization of carbazole.

Authors:  Masaki Shintani; Masaaki Urata; Kengo Inoue; Kaori Eto; Hiroshi Habe; Toshio Omori; Hisakazu Yamane; Hideaki Nojiri
Journal:  J Bacteriol       Date:  2006-12-15       Impact factor: 3.490

5.  Structure of the terminal oxygenase component of angular dioxygenase, carbazole 1,9a-dioxygenase.

Authors:  Hideaki Nojiri; Yuji Ashikawa; Haruko Noguchi; Jeong-Won Nam; Masaaki Urata; Zui Fujimoto; Hiromasa Uchimura; Tohru Terada; Shugo Nakamura; Kentaro Shimizu; Takako Yoshida; Hiroshi Habe; Toshio Omori
Journal:  J Mol Biol       Date:  2005-08-12       Impact factor: 5.469

6.  Electron transfer complex formation between oxygenase and ferredoxin components in Rieske nonheme iron oxygenase system.

Authors:  Yuji Ashikawa; Zui Fujimoto; Haruko Noguchi; Hiroshi Habe; Toshio Omori; Hisakazu Yamane; Hideaki Nojiri
Journal:  Structure       Date:  2006-12       Impact factor: 5.006

7.  Crystal structure of the ferredoxin component of carbazole 1,9a-dioxygenase of Pseudomonas resinovorans strain CA10, a novel Rieske non-heme iron oxygenase system.

Authors:  Jeong-Won Nam; Haruko Noguchi; Zui Fujimoto; Hiroshi Mizuno; Yuji Ashikawa; Mitsuru Abo; Shinya Fushinobu; Nobuyuki Kobashi; Takayoshi Wakagi; Kenichi Iwata; Takako Yoshida; Hiroshi Habe; Hisakazu Yamane; Toshio Omori; Hideaki Nojiri
Journal:  Proteins       Date:  2005-03-01

8.  Crystal structure of putidaredoxin reductase from Pseudomonas putida, the final structural component of the cytochrome P450cam monooxygenase.

Authors:  Irina F Sevrioukova; Huiying Li; Thomas L Poulos
Journal:  J Mol Biol       Date:  2004-02-27       Impact factor: 5.469

9.  X-ray crystal structure of benzoate 1,2-dioxygenase reductase from Acinetobacter sp. strain ADP1.

Authors:  Andreas Karlsson; Zanna M Beharry; D Matthew Eby; Eric D Coulter; Ellen L Neidle; Donald M Kurtz; Hans Eklund; S Ramaswamy
Journal:  J Mol Biol       Date:  2002-04-26       Impact factor: 5.469

10.  Phthalate dioxygenase reductase: a modular structure for electron transfer from pyridine nucleotides to [2Fe-2S].

Authors:  C C Correll; C J Batie; D P Ballou; M L Ludwig
Journal:  Science       Date:  1992-12-04       Impact factor: 47.728

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  3 in total

1.  Crystallization and preliminary X-ray diffraction studies of a terminal oxygenase of carbazole 1,9a-dioxygenase from Novosphingobium sp. KA1.

Authors:  Takashi Umeda; Junichi Katsuki; Yuji Ashikawa; Yusuke Usami; Kengo Inoue; Haruko Noguchi; Zui Fujimoto; Hisakazu Yamane; Hideaki Nojiri
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-10-28

2.  Three-Component O-Demethylase System Essential for Catabolism of a Lignin-Derived Biphenyl Compound in Sphingobium sp. Strain SYK-6.

Authors:  Taichi Yoshikata; Kazuya Suzuki; Naofumi Kamimura; Masahiro Namiki; Shojiro Hishiyama; Takuma Araki; Daisuke Kasai; Yuichiro Otsuka; Masaya Nakamura; Masao Fukuda; Yoshihiro Katayama; Eiji Masai
Journal:  Appl Environ Microbiol       Date:  2014-09-12       Impact factor: 4.792

3.  Electron Transport in a Dioxygenase-Ferredoxin Complex: Long Range Charge Coupling between the Rieske and Non-Heme Iron Center.

Authors:  Wayne K Dawson; Ryota Jono; Tohru Terada; Kentaro Shimizu
Journal:  PLoS One       Date:  2016-09-22       Impact factor: 3.240

  3 in total

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