Literature DB >> 16511100

Crystallization and preliminary X-ray diffraction analysis of the electron-transfer complex between the terminal oxygenase component and ferredoxin in the Rieske non-haem iron oxygenase system carbazole 1,9a-dioxygenase.

Yuji Ashikawa1, Zui Fujimoto, Haruko Noguchi, Hiroshi Habe, Toshio Omori, Hisakazu Yamane, Hideaki Nojiri.   

Abstract

Carbazole 1,9a-dioxygenase, which consists of an oxygenase component (CARDO-O) and the electron-transport components ferredoxin (CARDO-F) and ferredoxin reductase (CARDO-R), catalyzes dihydroxylation at the C1 and C9a positions of carbazole. The electron-transport complex between CARDO-O and CARDO-F crystallizes at 293 K using hanging-drop vapour diffusion with the precipitant PEG MME 2000 (type I crystals) or PEG 3350 (type II). Blossom-shaped crystals form from a pile of triangular plate-shaped crystals. The type I crystal diffracts to a maximum resolution of 1.90 A and belongs to space group P2(1), with unit-cell parameters a = 97.1, b = 89.8, c = 104.9 A, alpha = gamma = 90, beta = 103.8 degrees. Diffraction data for the type I crystal gave an overall Rmerge of 8.0% and a completeness of 100%. Its VM value is 2.63 A3 Da(-1), indicating a solvent content of 53.2%.

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Year:  2005        PMID: 16511100      PMCID: PMC1952320          DOI: 10.1107/S1744309105014557

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  24 in total

1.  Purification and characterization of carbazole 1,9a-dioxygenase, a three-component dioxygenase system of Pseudomonas resinovorans strain CA10.

Authors:  Jeong-Won Nam; Hideaki Nojiri; Haruko Noguchi; Hiromasa Uchimura; Takako Yoshida; Hiroshi Habe; Hisakazu Yamane; Toshio Omori
Journal:  Appl Environ Microbiol       Date:  2002-12       Impact factor: 4.792

2.  Structure of a cytochrome P450-redox partner electron-transfer complex.

Authors:  I F Sevrioukova; H Li; H Zhang; J A Peterson; T L Poulos
Journal:  Proc Natl Acad Sci U S A       Date:  1999-03-02       Impact factor: 11.205

Review 3.  Bacterial metabolism of fluorene, dibenzofuran, dibenzothiophene, and carbazole.

Authors:  D C Bressler; P M Fedorak
Journal:  Can J Microbiol       Date:  2000-05       Impact factor: 2.419

4.  Degradation of chlorinated dibenzofurans and dibenzo-p-dioxins by two types of bacteria having angular dioxygenases with different features.

Authors:  H Habe; J S Chung; J H Lee; K Kasuga; T Yoshida; H Nojiri; T Omori
Journal:  Appl Environ Microbiol       Date:  2001-08       Impact factor: 4.792

5.  Adrenodoxin reductase-adrenodoxin complex structure suggests electron transfer path in steroid biosynthesis.

Authors:  J J Müller; A Lapko; G Bourenkov; K Ruckpaul; U Heinemann
Journal:  J Biol Chem       Date:  2000-10-25       Impact factor: 5.157

6.  A redox-dependent interaction between two electron-transfer partners involved in photosynthesis.

Authors:  R Morales; M H Charon; G Kachalova; L Serre; M Medina; C Gómez-Moreno; M Frey
Journal:  EMBO Rep       Date:  2000-09       Impact factor: 8.807

Review 7.  Molecular bases of aerobic bacterial degradation of dioxins: involvement of angular dioxygenation.

Authors:  Hideaki Nojiri; Toshio Omori
Journal:  Biosci Biotechnol Biochem       Date:  2002-10       Impact factor: 2.043

8.  Diverse oxygenations catalyzed by carbazole 1,9a-dioxygenase from Pseudomonas sp. Strain CA10.

Authors:  H Nojiri; J W Nam; M Kosaka; K I Morii; T Takemura; K Furihata; H Yamane; T Omori
Journal:  J Bacteriol       Date:  1999-05       Impact factor: 3.490

9.  Structure of the electron transfer complex between ferredoxin and ferredoxin-NADP(+) reductase.

Authors:  G Kurisu; M Kusunoki; E Katoh; T Yamazaki; K Teshima; Y Onda; Y Kimata-Ariga; T Hase
Journal:  Nat Struct Biol       Date:  2001-02

Review 10.  Genetics of polycyclic aromatic hydrocarbon metabolism in diverse aerobic bacteria.

Authors:  Hiroshi Habe; Toshio Omori
Journal:  Biosci Biotechnol Biochem       Date:  2003-02       Impact factor: 2.043

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  13 in total

1.  Crystallization and preliminary X-ray diffraction studies of the terminal oxygenase component of carbazole 1,9a-dioxygenase from Nocardioides aromaticivorans IC177.

Authors:  Kengo Inoue; Yuji Ashikawa; Yusuke Usami; Haruko Noguchi; Zui Fujimoto; Hisakazu Yamane; Hideaki Nojiri
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2006-11-04

2.  Substrate-baited nanoparticles: a catch and release strategy for enzyme recognition and harvesting.

Authors:  Michael A Daniele; Yuriy P Bandera; Deepti Sharma; Parul Rungta; Ryan Roeder; Michael G Sehorn; Stephen H Foulger
Journal:  Small       Date:  2012-04-24       Impact factor: 13.281

3.  Crystallization and preliminary X-ray diffraction studies of the ferredoxin reductase component in the Rieske nonhaem iron oxygenase system carbazole 1,9a-dioxygenase.

Authors:  Yuji Ashikawa; Hiromasa Uchimura; Zui Fujimoto; Kengo Inoue; Haruko Noguchi; Hisakazu Yamane; Hideaki Nojiri
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-05-12

4.  Crystallization and preliminary crystallographic analysis of the ferredoxin component of carbazole 1,9a-dioxygenase from Nocardioides aromaticivorans IC177.

Authors:  Kengo Inoue; Yuji Ashikawa; Yusuke Usami; Haruko Noguchi; Zui Fujimoto; Hisakazu Yamane; Hideaki Nojiri
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-09-19

5.  Crystallization and preliminary X-ray diffraction studies of the reduced form of the terminal oxygenase component of the Rieske nonhaem iron oxygenase system carbazole 1,9a-dioxygenase.

Authors:  Jun Matsuzawa; Takashi Umeda; Hiroki Aikawa; Chiho Suzuki; Zui Fujimoto; Kazunori Okada; Hisakazu Yamane; Hideaki Nojiri
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2013-10-30

6.  Salicylate 5-Hydroxylase: Intermediates in Aromatic Hydroxylation by a Rieske Monooxygenase.

Authors:  Melanie S Rogers; John D Lipscomb
Journal:  Biochemistry       Date:  2019-05-15       Impact factor: 3.162

7.  Structural basis of the divergent oxygenation reactions catalyzed by the rieske nonheme iron oxygenase carbazole 1,9a-dioxygenase.

Authors:  Kengo Inoue; Yusuke Usami; Yuji Ashikawa; Haruko Noguchi; Takashi Umeda; Aiko Yamagami-Ashikawa; Tadafumi Horisaki; Hiromasa Uchimura; Tohru Terada; Shugo Nakamura; Kentaro Shimizu; Hiroshi Habe; Hisakazu Yamane; Zui Fujimoto; Hideaki Nojiri
Journal:  Appl Environ Microbiol       Date:  2014-02-28       Impact factor: 4.792

8.  Crystallization and preliminary X-ray diffraction studies of a novel ferredoxin involved in the dioxygenation of carbazole by Novosphingobium sp. KA1.

Authors:  Takashi Umeda; Junichi Katsuki; Yusuke Usami; Kengo Inoue; Haruko Noguchi; Zui Fujimoto; Yuji Ashikawa; Hisakazu Yamane; Hideaki Nojiri
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2008-06-11

9.  Distal end of 105-125 loop--a putative reductase binding domain of phthalate dioxygenase.

Authors:  Michael Tarasev; Sailaja Pullela; David P Ballou
Journal:  Arch Biochem Biophys       Date:  2009-05-22       Impact factor: 4.013

10.  Crystal structure of the ferredoxin reductase component of carbazole 1,9a-dioxygenase from Janthinobacterium sp. J3.

Authors:  Yuji Ashikawa; Zui Fujimoto; Kengo Inoue; Hisakazu Yamane; Hideaki Nojiri
Journal:  Acta Crystallogr D Struct Biol       Date:  2021-06-18       Impact factor: 7.652

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