Literature DB >> 18097093

Semi-automated microseeding of nanolitre crystallization experiments.

Thomas S Walter1, Erika J Mancini, Jan Kadlec, Stephen C Graham, René Assenberg, Jingshan Ren, Sarah Sainsbury, Raymond J Owens, David I Stuart, Jonathan M Grimes, Karl Harlos.   

Abstract

A simple semi-automated microseeding procedure for nanolitre crystallization experiments is described. Firstly, a microseed stock solution is made from microcrystals using a Teflon bead. A dilution series of this microseed stock is then prepared and dispensed as 100 nl droplets into 96-well crystallization plates, facilitating the incorporation of seeding into high-throughput crystallization pipelines. This basic microseeding procedure has been modified to include additive-screening and cross-seeding methods. Five examples in which these techniques have been used successfully are described.

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Year:  2007        PMID: 18097093      PMCID: PMC2373990          DOI: 10.1107/S1744309107057260

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  17 in total

1.  A method to produce microseed stock for use in the crystallization of biological macromolecules.

Authors:  J R Luft; G T DeTitta
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-05

Review 2.  A fully integrated protein crystallization platform for small-molecule drug discovery.

Authors:  David Hosfield; John Palan; Mark Hilgers; Daniel Scheibe; Duncan E McRee; Raymond C Stevens
Journal:  J Struct Biol       Date:  2003-04       Impact factor: 2.867

Review 3.  Nucleation of protein crystals.

Authors:  Juan Manuel García-Ruiz
Journal:  J Struct Biol       Date:  2003-04       Impact factor: 2.867

4.  A medium-throughput crystallization approach.

Authors:  Gerlind Sulzenbacher; Arnaud Gruez; Véronique Roig-Zamboni; Silvia Spinelli; Christel Valencia; Fabienne Pagot; Renaud Vincentelli; Christophe Bignon; Aurelia Salomoni; Sacha Grisel; Damien Maurin; Céline Huyghe; Kent Johansson; Alice Grassick; Alain Roussel; Yves Bourne; Sophie Perrier; Linda Miallau; Phillippe Cantau; Eric Blanc; Michel Genevois; Alain Grossi; André Zenatti; Valérie Campanacci; Christian Cambillau
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-11-23

5.  Benefits of automated crystallization plate tracking, imaging, and analysis.

Authors:  Christopher J Mayo; Jonathan M Diprose; Thomas S Walter; Ian M Berry; Julie Wilson; Ray J Owens; E Yvonne Jones; Karl Harlos; David I Stuart; Robert M Esnouf
Journal:  Structure       Date:  2005-02       Impact factor: 5.006

6.  Time-controlled microfluidic seeding in nL-volume droplets to separate nucleation and growth stages of protein crystallization.

Authors:  Cory J Gerdts; Valentina Tereshko; Maneesh K Yadav; Irina Dementieva; Frank Collart; Andrzej Joachimiak; Raymond C Stevens; Peter Kuhn; Anthony Kossiakoff; Rustem F Ismagilov
Journal:  Angew Chem Int Ed Engl       Date:  2006-12-11       Impact factor: 15.336

7.  An automated microseed matrix-screening method for protein crystallization.

Authors:  Allan D'Arcy; Frederic Villard; May Marsh
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2007-03-16

8.  Crystallization and preliminary X-ray diffraction characterisation of both a native and selenomethionyl VLA-4 binding fragment of VCAM-1.

Authors:  M J Bottomley; R C Robinson; P C Driscoll; K Harlos; D I Stuart; R T Aplin; J M Clements; E Y Jones; T J Dudgeon
Journal:  J Mol Biol       Date:  1994-12-09       Impact factor: 5.469

9.  Structure of CrmE, a virus-encoded tumour necrosis factor receptor.

Authors:  Stephen C Graham; Mohammad W Bahar; Nicola G A Abrescia; Geoffrey L Smith; David I Stuart; Jonathan M Grimes
Journal:  J Mol Biol       Date:  2007-07-03       Impact factor: 5.469

10.  Structure of the Murray Valley encephalitis virus RNA helicase at 1.9 Angstrom resolution.

Authors:  Erika J Mancini; Rene Assenberg; Anil Verma; Thomas S Walter; Roman Tuma; Jonathan M Grimes; Raymond J Owens; David I Stuart
Journal:  Protein Sci       Date:  2007-10       Impact factor: 6.725

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  14 in total

1.  Crystallization of a challenging antigen-antibody complex: TLR3 ECD with three noncompeting Fabs.

Authors:  Thomas J Malia; Galina Obmolova; Jinquan Luo; Alexey Teplyakov; Raymond Sweet; Gary L Gilliland
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-09-30

2.  Structure of the cold-shock domain protein from Neisseria meningitidis reveals a strand-exchanged dimer.

Authors:  Jingshan Ren; Joanne E Nettleship; Sarah Sainsbury; Nigel J Saunders; Raymond J Owens
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2008-03-21

3.  Crystal structure of a novel conformational state of the flavivirus NS3 protein: implications for polyprotein processing and viral replication.

Authors:  René Assenberg; Eloise Mastrangelo; Thomas S Walter; Anil Verma; Mario Milani; Raymond J Owens; David I Stuart; Jonathan M Grimes; Erika J Mancini
Journal:  J Virol       Date:  2009-09-30       Impact factor: 5.103

4.  Soaking of DNA into crystals of archaeal RNA polymerase achieved by desalting in droplets.

Authors:  Magdalena N Wojtas; Nicola G A Abrescia
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2012-08-31

5.  Microseed matrix screening for optimization in protein crystallization: what have we learned?

Authors:  Allan D'Arcy; Terese Bergfors; Sandra W Cowan-Jacob; May Marsh
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-08-29       Impact factor: 1.056

6.  X-ray transparent microfluidic platforms for membrane protein crystallization with microseeds.

Authors:  Jeremy M Schieferstein; Ashtamurthy S Pawate; Michael J Varel; Sudipto Guha; Ieva Astrauskaite; Robert B Gennis; Paul J A Kenis
Journal:  Lab Chip       Date:  2018-03-13       Impact factor: 6.799

7.  Insights into Krabbe disease from structures of galactocerebrosidase.

Authors:  Janet E Deane; Stephen C Graham; Nee Na Kim; Penelope E Stein; Rosamund McNair; M Begoña Cachón-González; Timothy M Cox; Randy J Read
Journal:  Proc Natl Acad Sci U S A       Date:  2011-08-29       Impact factor: 11.205

8.  Promoting crystallization of antibody-antigen complexes via microseed matrix screening.

Authors:  Galina Obmolova; Thomas J Malia; Alexey Teplyakov; Raymond Sweet; Gary L Gilliland
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-07-14

9.  Structural snapshots illustrate the catalytic cycle of β-galactocerebrosidase, the defective enzyme in Krabbe disease.

Authors:  Chris H Hill; Stephen C Graham; Randy J Read; Janet E Deane
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-02       Impact factor: 11.205

10.  Protein crystallization with microseed matrix screening: application to human germline antibody Fabs.

Authors:  Galina Obmolova; Thomas J Malia; Alexey Teplyakov; Raymond W Sweet; Gary L Gilliland
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-07-23       Impact factor: 1.056

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