Literature DB >> 15698562

Benefits of automated crystallization plate tracking, imaging, and analysis.

Christopher J Mayo1, Jonathan M Diprose, Thomas S Walter, Ian M Berry, Julie Wilson, Ray J Owens, E Yvonne Jones, Karl Harlos, David I Stuart, Robert M Esnouf.   

Abstract

We describe the design of a database and software for managing and organizing protein crystallization data. We also outline the considerations behind the design of a fast web interface linking protein production data, crystallization images, and automated image analysis. The database and associated interfaces underpin the Oxford Protein Production Facility (OPPF) crystallization laboratory, collecting, in a routine and automatic manner, up to 100,000 images per day. Over 17 million separate images are currently held in this database. We discuss the substantial scientific benefits automated tracking, imaging, and analysis of crystallizations offers to the structural biologist: analysis of the time course of the trial and easy analysis of trials with related crystallization conditions. Features of this system address requirements common to many crystallographic laboratories that are currently setting up (semi-)automated crystallization imaging systems.

Mesh:

Year:  2005        PMID: 15698562     DOI: 10.1016/j.str.2004.12.010

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  15 in total

1.  Semi-automated microseeding of nanolitre crystallization experiments.

Authors:  Thomas S Walter; Erika J Mancini; Jan Kadlec; Stephen C Graham; René Assenberg; Jingshan Ren; Sarah Sainsbury; Raymond J Owens; David I Stuart; Jonathan M Grimes; Karl Harlos
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-12-20

2.  Preliminary crystallographic analysis of the major capsid protein P2 of the lipid-containing bacteriophage PM2.

Authors:  Nicola G A Abrescia; Hanna M Kivelä; Jonathan M Grimes; Jaana K H Bamford; Dennis H Bamford; David I Stuart
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2005-07-30

3.  Crystallization and preliminary X-ray analysis of mouse RANK and its complex with RANKL.

Authors:  Thomas S Walter; Changzhen Liu; Peng Huang; Shiqian Zhang; Lucy R Wedderburn; Bin Gao; Raymond J Owens; David I Stuart; Peifu Tang; Jingshan Ren
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-05-22

4.  A rational protocol for the successful crystallization of L-amino-acid oxidase from Bothrops atrox.

Authors:  Raquel Melo Alves; Patricia Rosa Feliciano; Suely Vilela Sampaio; Maria Cristina Nonato
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-03-25

5.  Robust Production, Crystallization, Structure Determination, and Analysis of [Fe-S] Proteins: Uncovering Control of Electron Shuttling and Gating in the Respiratory Metabolism of Molybdopterin Guanine Dinucleotide Enzymes.

Authors:  Chi-Lin Tsai; John A Tainer
Journal:  Methods Enzymol       Date:  2017-12-19       Impact factor: 1.600

6.  xtalPiMS: a PiMS-based web application for the management and monitoring of crystallization trials.

Authors:  Ed Daniel; Bill Lin; Jonathan M Diprose; Susanne L Griffiths; Chris Morris; Ian M Berry; Raymond J Owens; Richard Blake; Keith S Wilson; David I Stuart; Robert M Esnouf
Journal:  J Struct Biol       Date:  2011-05-14       Impact factor: 2.867

7.  Structural basis of semaphorin-plexin signalling.

Authors:  Bert J C Janssen; Ross A Robinson; Francesc Pérez-Brangulí; Christian H Bell; Kevin J Mitchell; Christian Siebold; E Yvonne Jones
Journal:  Nature       Date:  2010-09-26       Impact factor: 49.962

8.  Structure of the Murray Valley encephalitis virus RNA helicase at 1.9 Angstrom resolution.

Authors:  Erika J Mancini; Rene Assenberg; Anil Verma; Thomas S Walter; Roman Tuma; Jonathan M Grimes; Raymond J Owens; David I Stuart
Journal:  Protein Sci       Date:  2007-10       Impact factor: 6.725

9.  Neuropilins lock secreted semaphorins onto plexins in a ternary signaling complex.

Authors:  Bert J C Janssen; Tomas Malinauskas; Greg A Weir; M Zameel Cader; Christian Siebold; E Yvonne Jones
Journal:  Nat Struct Mol Biol       Date:  2012-10-28       Impact factor: 15.369

10.  A dual binding mode for RhoGTPases in plexin signalling.

Authors:  Christian H Bell; A Radu Aricescu; E Yvonne Jones; Christian Siebold
Journal:  PLoS Biol       Date:  2011-08-30       Impact factor: 8.029

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.