Literature DB >> 25195878

Microseed matrix screening for optimization in protein crystallization: what have we learned?

Allan D'Arcy1, Terese Bergfors2, Sandra W Cowan-Jacob3, May Marsh4.   

Abstract

Protein crystals obtained in initial screens typically require optimization before they are of X-ray diffraction quality. Seeding is one such optimization method. In classical seeding experiments, the seed crystals are put into new, albeit similar, conditions. The past decade has seen the emergence of an alternative seeding strategy: microseed matrix screening (MMS). In this strategy, the seed crystals are transferred into conditions unrelated to the seed source. Examples of MMS applications from in-house projects and the literature include the generation of multiple crystal forms and different space groups, better diffracting crystals and crystallization of previously uncrystallizable targets. MMS can be implemented robotically, making it a viable option for drug-discovery programs. In conclusion, MMS is a simple, time- and cost-efficient optimization method that is applicable to many recalcitrant crystallization problems.

Entities:  

Keywords:  crystallization; microseed matrix screening; optimization

Mesh:

Substances:

Year:  2014        PMID: 25195878      PMCID: PMC4157405          DOI: 10.1107/S2053230X14015507

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


  24 in total

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Authors:  N E Chayen; E Saridakis; R El-Bahar; Y Nemirovsky
Journal:  J Mol Biol       Date:  2001-09-28       Impact factor: 5.469

2.  Protein nucleation and crystallization by homologous protein thin film template.

Authors:  Eugenia Pechkova; Claudio Nicolini
Journal:  J Cell Biochem       Date:  2002       Impact factor: 4.429

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Authors:  L Rong; H Komatsu; I Yoshizaki; A Kadowaki; S Yoda
Journal:  J Synchrotron Radiat       Date:  2003-11-28       Impact factor: 2.616

4.  Semi-automated microseeding of nanolitre crystallization experiments.

Authors:  Thomas S Walter; Erika J Mancini; Jan Kadlec; Stephen C Graham; René Assenberg; Jingshan Ren; Sarah Sainsbury; Raymond J Owens; David I Stuart; Jonathan M Grimes; Karl Harlos
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-12-20

5.  The role of bias in crystallization conditions in automated microseeding.

Authors:  Franz J St John; Bo Feng; Edwin Pozharski
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2008-11-18

6.  Developing a Fluorescence-based Approach to Screening for Macromolecule Crystallization Conditions.

Authors:  Marc L Pusey
Journal:  Cryst Growth Des       Date:  2011       Impact factor: 4.076

7.  Structural and functional studies of mycobacterial IspD enzymes.

Authors:  Christofer Björkelid; Terese Bergfors; Lena M Henriksson; Ana Laura Stern; Torsten Unge; Sherry L Mowbray; T Alwyn Jones
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-04-08

8.  Promoting crystallization of antibody-antigen complexes via microseed matrix screening.

Authors:  Galina Obmolova; Thomas J Malia; Alexey Teplyakov; Raymond Sweet; Gary L Gilliland
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-07-14

9.  Structure of the extracellular portion of CD46 provides insights into its interactions with complement proteins and pathogens.

Authors:  B David Persson; Nikolaus B Schmitz; César Santiago; Georg Zocher; Mykol Larvie; Ulrike Scheu; José M Casasnovas; Thilo Stehle
Journal:  PLoS Pathog       Date:  2010-09-30       Impact factor: 6.823

10.  Protein crystallization with microseed matrix screening: application to human germline antibody Fabs.

Authors:  Galina Obmolova; Thomas J Malia; Alexey Teplyakov; Raymond W Sweet; Gary L Gilliland
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-07-23       Impact factor: 1.056

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  27 in total

1.  Inhibition, crystal structures, and in-solution oligomeric structure of aldehyde dehydrogenase 9A1.

Authors:  Jesse W Wyatt; David A Korasick; Insaf A Qureshi; Ashley C Campbell; Kent S Gates; John J Tanner
Journal:  Arch Biochem Biophys       Date:  2020-07-24       Impact factor: 4.013

Review 2.  Optimization of crystallization conditions for biological macromolecules.

Authors:  Alexander McPherson; Bob Cudney
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-10-31       Impact factor: 1.056

3.  Origin and use of crystallization phase diagrams.

Authors:  Bernhard Rupp
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2015-02-28       Impact factor: 1.056

4.  mScarlet: a bright monomeric red fluorescent protein for cellular imaging.

Authors:  Daphne S Bindels; Lindsay Haarbosch; Laura van Weeren; Marten Postma; Katrin E Wiese; Marieke Mastop; Sylvain Aumonier; Guillaume Gotthard; Antoine Royant; Mark A Hink; Theodorus W J Gadella
Journal:  Nat Methods       Date:  2016-11-21       Impact factor: 28.547

5.  Substrate N2 atom recognition mechanism in pierisin family DNA-targeting, guanine-specific ADP-ribosyltransferase ScARP.

Authors:  Toru Yoshida; Hideaki Tsuge
Journal:  J Biol Chem       Date:  2018-08-02       Impact factor: 5.157

6.  An 1,4-α-Glucosyltransferase Defines a New Maltodextrin Catabolism Scheme in Lactobacillus acidophilus.

Authors:  Susan Andersen; Marie S Møller; Jens-Christian N Poulsen; Michael J Pichler; Birte Svensson; Leila Lo Leggio; Yong Jun Goh; Maher Abou Hachem
Journal:  Appl Environ Microbiol       Date:  2020-07-20       Impact factor: 4.792

7.  X-ray transparent microfluidic platforms for membrane protein crystallization with microseeds.

Authors:  Jeremy M Schieferstein; Ashtamurthy S Pawate; Michael J Varel; Sudipto Guha; Ieva Astrauskaite; Robert B Gennis; Paul J A Kenis
Journal:  Lab Chip       Date:  2018-03-13       Impact factor: 6.799

8.  Activity-based probes for functional interrogation of retaining β-glucuronidases.

Authors:  Liang Wu; Jianbing Jiang; Yi Jin; Wouter W Kallemeijn; Chi-Lin Kuo; Marta Artola; Wei Dai; Cas van Elk; Marco van Eijk; Gijsbert A van der Marel; Jeroen D C Codée; Bogdan I Florea; Johannes M F G Aerts; Herman S Overkleeft; Gideon J Davies
Journal:  Nat Chem Biol       Date:  2017-06-05       Impact factor: 15.040

9.  Structural basis of keto acid utilization in nonribosomal depsipeptide synthesis.

Authors:  Diego A Alonzo; Clarisse Chiche-Lapierre; Michael J Tarry; Jimin Wang; T Martin Schmeing
Journal:  Nat Chem Biol       Date:  2020-02-17       Impact factor: 15.040

10.  Optimizing Associative Experimental Design for Protein Crystallization Screening.

Authors:  Imren Dinc; Marc L Pusey; Ramazan S Aygun
Journal:  IEEE Trans Nanobioscience       Date:  2016-02-29       Impact factor: 2.935

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